Factsheet for GSMUA_Achr10P18080_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr2P01120_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P25250_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P21580_001
GSMUA_Achr6P23670_001
GSMUA_Achr6P36120_001
GSMUA_Achr8P00880_001
GSMUA_Achr8P05790_001
GSMUA_Achr8P08650_001
GSMUA_Achr9P17280_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27690.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr11P...	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr2P01120_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr3P09330_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr3P25040_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr5P07820_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr5P27590_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr6P15990_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr6P23670_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr8P05790_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr9P17280_001	AT2G41100.1	17360592
AT1G27690.1	GSMUA_Achr11P...	AT3G07120.1	21798944
AT1G27690.1	GSMUA_Achr5P25250_001	AT3G07120.1	21798944
AT1G27690.1	GSMUA_Achr8P00880_001	AT3G07120.1	21798944
AT1G27690.1	GSMUA_Achr8P08650_001	AT3G07120.1	21798944
AT1G27690.1	GSMUA_AchrUn_...	AT3G07120.1	21798944
AT1G49840.1	GSMUA_Achr6P21580_001	AT1G21840.1	21798944
AT3G19540.1	GSMUA_Achr6P36120_001	AT5G62880.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	59.9	81.76
GSMUA_Achr2P21540_001	Banana	plastid	83.77	80.32
GSMUA_Achr7P00620_001	Banana	mitochondrion	70.41	72.48
GSMUA_Achr2P13470_001	Banana	cytosol	73.75	70.39
GSMUA_Achr10P...	Banana	cytosol	64.44	69.41
GSMUA_Achr4P32590_001	Banana	cytosol	73.75	68.36
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	72.31	66.16
KRG91072	Soybean	plastid	72.08	65.23
GSMUA_Achr6P16820_001	Banana	cytosol	68.26	64.85
KRH35700	Soybean	plastid	71.36	64.72
VIT_03s0091g00410.t01	Wine grape	plastid	73.03	64.42
Solyc01g107350.2.1	Tomato	plastid	70.88	63.19
PGSC0003DMT400066530	Potato	plastid	70.41	62.77
Solyc04g078190.2.1	Tomato	nucleus, plastid	43.44	62.12
GSMUA_Achr6P24020_001	Banana	cytosol	58.95	61.6
CDY50147	Canola	mitochondrion	63.96	61.05
VIT_18s0001g09450.t01	Wine grape	plastid	68.26	60.98
CDX95439	Canola	mitochondrion	63.01	60.69
PGSC0003DMT400055468	Potato	plastid	68.02	60.64
KRH15430	Soybean	plastid	67.78	60.04
Bra038214.1-P	Field mustard	mitochondrion, plastid	65.63	59.91
KRH05611	Soybean	plastid	68.02	59.87
Bra022430.1-P	Field mustard	mitochondrion, plastid	64.68	57.78
AT3G19540.1	Thale cress	plastid	66.59	57.53
CDY46168	Canola	mitochondrion	62.53	57.46
CDY67693	Canola	mitochondrion	62.05	57.27
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	65.16	56.88
CDY16530	Canola	plastid	61.1	56.64
CDY32838	Canola	plastid	60.62	55.82
Bra014219.1-P	Field mustard	plastid	63.25	54.3
AT1G49840.1	Thale cress	plastid	63.48	53.85
CDY03939	Canola	cytosol	14.32	50.85
AT1G27690.1	Thale cress	plastid	52.51	50.81
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	38.19	48.93
GSMUA_Achr9P25120_001	Banana	mitochondrion	36.75	45.7
CDX90103	Canola	mitochondrion, plastid	51.31	42.41
CDY67976	Canola	mitochondrion, plastid	51.31	42.41
Bra010924.1-P	Field mustard	mitochondrion, plastid	53.94	42.32
GSMUA_Achr3P29550_001	Banana	cytosol	35.56	41.85
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	36.04	39.84
GSMUA_Achr6P33890_001	Banana	cytosol	36.28	39.69
GSMUA_Achr2P13560_001	Banana	cytosol	35.08	38.99
GSMUA_Achr4P27870_001	Banana	cytosol	35.08	38.68
GSMUA_Achr5P28960_001	Banana	cytosol	38.42	36.93

Protein Annotations

EnsemblPlants:GSMUA_Achr10P18080_001	EnsemblPlants:GSMUA_Achr10T18080_001	EnsemblPlantsGene:GSMUA_Achr10G18080_001	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF1
PFAM:PF04788	SEG:seg	UniParc:UPI00029587E4	UniProt:M0RJ83	MapMan:27.4.5.3	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G18080_001]

Coordinates

chr10:-:24987683..24989842

Molecular Weight (calculated)

45293.2 Da

IEP (calculated)

10.172

GRAVY (calculated)

-0.304

Length

419 amino acids

Sequence
(BLAST)

001: MEKKQGFFSA LREEVARGLS PARSRSRSES PRRGASPVAD LLLPTRWKRQ QPRGFPAELL VPASGSLAPL AEGPEGEGSG PGKGGWGQWM KGRLSRAPSV
101: SGAAASCHRS DLRLLLGVMG APLAPVHVSP TYALPHLSIK DTPIETSSAQ YILQQYTAAS GGLKLLSSIR NAYAMGKVRM VASEFETATR VIKNHSVTKD
201: AEPGGFVLWQ MAPGMWYVEL AVGGSKVRAG CNGKLVWRHT PWLGAHAAKG PVRPLRRALQ GLDPLTTASM FSDAHQKTGL LTYMEDSHLT RIQSSVGGDA
301: VYWETSINSS IEDYRPVEGV MIAHSGRSAV NLFRFGEVAM SHTKNRMEEV WTIEEVAFNV AGLSVDCFIP PADVKRGTVS EACELPQSER GRSSMAGSHR
401: AKVAALDKPD GNIRWRAEK

Best Arabidopsis Sequence Match ( AT1G27690.1 )
(BLAST)

001: MDKKHGLFSK SNSRRPRSKS PVRSVSPIII RRRKGRYVTQ PDRHMSEMLA PVIEGPDPDA EDSGSSGDYS RFERRWYNWM KCQLPVAPPS VSSSSDFKRT
101: DLRLLLGVLG APLGPVHVSA LDLLPHLSIK NTPMETSSAQ YILQQYTAAS GGQKLHSSVQ NGYVMGRIRT MASEFETGSK GSKSKNNSSK AVESGGFVLW
201: HMNPDMWYME LVLGGSKVLA GCDGKLVWRH TPWLGPHAAK GPVRPLRRAL QGLDPRTTAY MFANARCIGE KKIDGEDCFI LKLCADPATL KARSEGASET
301: IRHTLFGYFS QKTGLLVHLE DSQLTRIQNN GGEAVYWETT INSYLEDYKP VEGIMIAHSG RSVATLLRFG DMSSGHNTKT TMQEAWVIDE ISFNVPGLSI
401: DCFIPPSELR FDSHVEDLSQ GPKIRTLHGH KNG

Arabidopsis Description

Lipase, putative (DUF620) [Source:UniProtKB/TrEMBL;Acc:Q8RWY0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.