CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRG99707
KRH05664
KRH18664
KRH46683
KRH52013
KRH61306
KRH61311

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27690.1	KRG89812	AT2G41100.1	17360592
AT1G27690.1	KRG94975	AT2G41100.1	17360592
AT1G27690.1	KRH18664	AT2G41100.1	17360592
AT1G27690.1	KRG99707	AT3G07120.1	21798944
AT1G27690.1	KRH46683	AT3G07120.1	21798944
AT1G27690.1	KRH05664	AT5G42940.1	21798944
AT1G27690.1	KRH52013	AT5G42940.1	21798944
AT1G27690.1	KRH61306	AT5G42940.1	21798944
AT1G27690.1	KRH61311	AT5G42940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15430	Soybean	plastid	97.06	97.67
VIT_18s0001g09450.t01	Wine grape	plastid	80.46	81.66
PGSC0003DMT400055468	Potato	plastid	78.36	79.36
KRG91072	Soybean	plastid	73.74	75.81
KRH35700	Soybean	plastid	73.53	75.76
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	71.64	74.45
GSMUA_Achr4P32590_001	Banana	cytosol	67.65	71.24
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	45.8	71.01
GSMUA_Achr6P16820_001	Banana	cytosol	65.34	70.52
GSMUA_Achr10P...	Banana	cytosol	57.56	70.44
Solyc04g078190.2.1	Tomato	nucleus, plastid	43.07	69.97
GSMUA_Achr6P24020_001	Banana	cytosol	58.61	69.58
GSMUA_Achr7P00620_001	Banana	mitochondrion	58.82	68.8
Os12t0581300-01	Rice	cytosol	22.69	68.35
GSMUA_Achr10P...	Banana	plastid	59.87	68.02
OQU79433	Sorghum	cytosol	63.66	67.48
AT1G27690.1	Thale cress	plastid	61.34	67.44
TraesCS5B01G078600.2	Wheat	cytosol	59.87	66.28
GSMUA_Achr2P21540_001	Banana	plastid	60.71	66.13
HORVU5Hr1G018870.3	Barley	cytosol, mitochondrion	63.87	66.09
TraesCS4B01G077800.1	Wheat	cytosol	63.45	66.08
TraesCS5D01G085100.1	Wheat	cytosol	64.08	65.87
TraesCS4A01G237300.1	Wheat	cytosol, mitochondrion	63.24	65.86
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	66.39	65.83
TraesCS4D01G076200.1	Wheat	cytosol, mitochondrion	63.03	65.65
TraesCS5A01G072300.1	Wheat	cytosol	63.66	65.44
TraesCS2D01G192800.1	Wheat	nucleus	68.7	64.62
TraesCS2B01G211900.1	Wheat	nucleus	68.7	64.24
GSMUA_Achr2P13470_001	Banana	cytosol	59.24	64.24
TraesCS2A01G194900.1	Wheat	nucleus	68.49	64.17
Os03t0606100-01	Rice	cytosol	59.03	63.86
Os07t0591100-01	Rice	nucleus	69.33	63.71
EER99634	Sorghum	nucleus	69.54	63.41
EER91248	Sorghum	cytosol	61.13	62.31
OQU92347	Sorghum	mitochondrion, plastid	63.66	62.22
Zm00001d030837_P001	Maize	cytosol, mitochondrion	62.18	61.92
CDY03939	Canola	cytosol	15.34	61.86
Zm00001d013746_P001	Maize	cytosol	59.87	61.56
Zm00001d047324_P001	Maize	cytosol	62.18	60.41
Zm00001d006749_P001	Maize	cytosol	66.18	59.89
Zm00001d022006_P001	Maize	cytosol, plastid	68.28	58.35
HORVU4Hr1G013190.8	Barley	mitochondrion	58.61	55.25
CDX90103	Canola	mitochondrion, plastid	58.82	55.23
CDY67976	Canola	mitochondrion, plastid	58.61	55.03
Zm00001d016585_P002	Maize	extracellular, plasma membrane	29.2	54.94
Bra010924.1-P	Field mustard	mitochondrion, plastid	61.55	54.87
KRH43665	Soybean	mitochondrion, peroxisome, plasma membrane, plastid	40.76	50.39
KRH13789	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	40.34	50.0
KRG96347	Soybean	cytosol	36.13	48.73
KRH71794	Soybean	cytosol	36.97	48.62
KRH38019	Soybean	peroxisome	36.34	47.92
KRH68081	Soybean	cytosol	35.92	47.9
KRH73113	Soybean	cytosol	38.87	43.63
KRH50361	Soybean	cytosol	34.66	43.19
KRH51867	Soybean	cytosol	34.45	42.93
KRH31070	Soybean	cytosol	39.08	42.66
KRG97798	Soybean	cytosol	39.29	42.6
KRH15018	Soybean	cytosol	37.4	41.69
KRH28651	Soybean	cytosol	32.14	40.48
KRH05801	Soybean	cytosol	32.56	40.26
KRH76791	Soybean	cytosol	31.3	39.84

Protein Annotations

EMBL:ACUP02010763	EnsemblPlants:KRH05611	EnsemblPlantsGene:GLYMA_17G237000	EntrezGene:100800721	InterPro:DUF620	PANTHER:PTHR31300
PANTHER:PTHR31300:SF7	PFAM:PF04788	ProteinID:KRH05611	ProteinID:KRH05611.1	SEG:seg	UniParc:UPI000233E51D
UniProt:I1MXJ5	MapMan:27.4.5.3	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:39221095..39223962

Molecular Weight (calculated)

52229.3 Da

IEP (calculated)

9.823

GRAVY (calculated)

-0.358

Length

476 amino acids

Sequence
(BLAST)

001: MERKQGFFSA LKDEVVRGLS PARSRAKSPA RSASPMSSLL RRRRKHYAPP PELFIARSGS LRPAEALSPL KEGPDGTDDG GHDSTRGEGR WGQWMKGPLA
101: RAPSVSSSSS SSSCNNKKSD LRLLLGVLGA PLAPVHVCTT DPFPHLSIKD IPIETSSAQY ILQQYIAASG GQRLQNSINN AYAMGKVRMI ASEFETANKV
201: TRSRNSSKAA ESGGFVLWQM NPDMWYVELA LGGSKVHAGC NGRLVWRHTP WLGAHAAKGP VRPLRRALQG LDPRTTASMF INARCIGEKK INEEDCFILK
301: LFADPSTLKA RSEGPAEIIR HVLFGYFSQK TGLLVHLEDS HLTRIQNNGG EAVYWETTIN SFLDDYRPVE GIMIAHSGRS VVTLFRFGET AMSHTKTRME
401: EAWTIEEVAF NVPGLSLDCF IPPSELRFAS MSEACELPQG QRVKTAVAAA AYHAKVAQLQ KSHGSNTNNI NWTVDV

Best Arabidopsis Sequence Match ( AT3G19540.1 )
(BLAST)

001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV

Arabidopsis Description

AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.