Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU79433 | Sorghum | cytosol | 82.01 | 87.31 |
| TraesCS5D01G085100.1 | Wheat | cytosol | 79.71 | 82.29 |
| TraesCS5A01G072300.1 | Wheat | cytosol | 79.5 | 82.07 |
| TraesCS5B01G078600.2 | Wheat | cytosol | 73.64 | 81.86 |
| HORVU5Hr1G018870.3 | Barley | cytosol, mitochondrion | 78.66 | 81.74 |
| Os12t0581300-01 | Rice | cytosol | 25.94 | 78.48 |
| Zm00001d013746_P001 | Maize | cytosol | 71.76 | 74.08 |
| GSMUA_Achr7P00620_001 | Banana | mitochondrion | 57.74 | 67.81 |
| VIT_03s0091g00410.t01 | Wine grape | plastid | 66.95 | 67.37 |
| KRH35700 | Soybean | plastid | 64.64 | 66.88 |
| KRG91072 | Soybean | plastid | 64.44 | 66.52 |
| PGSC0003DMT400066530 | Potato | plastid | 65.06 | 66.17 |
| CDY50147 | Canola | mitochondrion | 60.46 | 65.83 |
| CDX95439 | Canola | mitochondrion | 59.83 | 65.75 |
| Solyc01g107350.2.1 | Tomato | plastid | 64.64 | 65.74 |
| VIT_18s0001g09450.t01 | Wine grape | plastid | 62.76 | 63.97 |
| Bra038214.1-P | Field mustard | mitochondrion, plastid | 60.04 | 62.53 |
| PGSC0003DMT400055468 | Potato | plastid | 61.3 | 62.34 |
| KRH05611 | Soybean | plastid | 61.92 | 62.18 |
| CDY67693 | Canola | mitochondrion | 59.0 | 62.11 |
| KRH15430 | Soybean | plastid | 61.3 | 61.95 |
| Zm00001d047324_P001 | Maize | cytosol | 63.18 | 61.63 |
| CDY46168 | Canola | mitochondrion | 58.79 | 61.62 |
| Bra022430.1-P | Field mustard | mitochondrion, plastid | 60.04 | 61.19 |
| AT3G19540.1 | Thale cress | plastid | 61.72 | 60.82 |
| CDY16530 | Canola | plastid | 56.07 | 59.29 |
| Zm00001d006749_P001 | Maize | cytosol | 65.06 | 59.13 |
| CDY32838 | Canola | plastid | 55.86 | 58.68 |
| Zm00001d022006_P001 | Maize | cytosol, plastid | 67.15 | 57.63 |
| Zm00001d016585_P002 | Maize | extracellular, plasma membrane | 30.13 | 56.92 |
| AT1G27690.1 | Thale cress | plastid | 50.84 | 56.12 |
| Solyc04g078190.2.1 | Tomato | nucleus, plastid | 34.31 | 55.97 |
| AT1G49840.1 | Thale cress | plastid | 57.74 | 55.87 |
| Bra014219.1-P | Field mustard | plastid | 56.9 | 55.74 |
| CDY03939 | Canola | cytosol | 12.76 | 51.69 |
| Zm00001d027816_P001 | Maize | cytosol | 37.45 | 49.58 |
| CDX90103 | Canola | mitochondrion, plastid | 50.42 | 47.53 |
| CDY67976 | Canola | mitochondrion, plastid | 50.21 | 47.34 |
| Bra010924.1-P | Field mustard | mitochondrion, plastid | 51.88 | 46.44 |
| Zm00001d043364_P001 | Maize | mitochondrion | 11.09 | 43.8 |
| Zm00001d012676_P001 | Maize | cytosol | 33.89 | 42.41 |
| Zm00001d047840_P001 | Maize | cytosol, peroxisome, plastid | 39.75 | 41.76 |
| Zm00001d028565_P002 | Maize | cytosol | 39.54 | 41.09 |
| Zm00001d037792_P001 | Maize | cytosol, nucleus, plastid | 37.03 | 36.49 |
Protein Annotations
| EnsemblPlants:Zm00001d030837_P001 | EnsemblPlants:Zm00001d030837_T001 | EnsemblPlantsGene:Zm00001d030837 | EntrezGene:103640485 | InterPro:DUF620 | PANTHER:PTHR31300 |
| PANTHER:PTHR31300:SF20 | PFAM:PF04788 | ProteinID:ONM01595.1 | SEG:seg | UniParc:UPI0004DEB5F1 | UniProt:A0A1D6KEM3 |
| MapMan:27.4.5.3 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:162455095..162458202
Molecular Weight (calculated)
50363.4 Da
IEP (calculated)
9.091
GRAVY (calculated)
-0.104
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAKRQGFFS ALREEVARGL SPGRARRRSA SNAAEVAAAL RRLGGGGEAL APLMEGPDPE AGPGATCGGS ARKEGGWGRW VRGQLQLTRA PALEAGAGAG
101: SGAAAAAAAA GRRNDLRLLL GVMGAPLAPV HVCAAEPLPH LSIKDTPIET SSAQYILQQY LAASGGQRLL SSIRNSYAMG KVRMVATEFE AGGRVVRNRM
201: AAQRAEPGRF VLWQMAPEMW YMELAVGGSK VHAGCNGKLV WRHTPWLGAH SAKGPVRPLR RALQGLDPLT AASMFAGARC IGERKVNGED CFILKLSADP
301: ETLRARSEGL AEIIRHVLFG YFSHKSGLLV HLEDSHLTRI QSATGGDAVY WETTISSSVE DYRAVDGVVV AHAGRSAVTL FRFGEAAVGL GHTKTRMEEA
401: WTIEEVAFDV PGLSADCFIP PTDVGPGSVS EAAELPRGER SKAAAGLVLP CHRARVAALE KADDGGVAWS GALQLGCK
101: SGAAAAAAAA GRRNDLRLLL GVMGAPLAPV HVCAAEPLPH LSIKDTPIET SSAQYILQQY LAASGGQRLL SSIRNSYAMG KVRMVATEFE AGGRVVRNRM
201: AAQRAEPGRF VLWQMAPEMW YMELAVGGSK VHAGCNGKLV WRHTPWLGAH SAKGPVRPLR RALQGLDPLT AASMFAGARC IGERKVNGED CFILKLSADP
301: ETLRARSEGL AEIIRHVLFG YFSHKSGLLV HLEDSHLTRI QSATGGDAVY WETTISSSVE DYRAVDGVVV AHAGRSAVTL FRFGEAAVGL GHTKTRMEEA
401: WTIEEVAFDV PGLSADCFIP PTDVGPGSVS EAAELPRGER SKAAAGLVLP CHRARVAALE KADDGGVAWS GALQLGCK
001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV
Arabidopsis Description
AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.