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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 5
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra010128.1-P
Bra029240.1-P
Bra035878.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G19540.1 Bra010128.1-P AT5G62880.1 21798944
AT3G19540.1 Bra029240.1-P AT5G62880.1 21798944
AT3G19540.1 Bra035878.1-P AT5G62880.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY50147 Canola mitochondrion 95.21 99.54
CDX95439 Canola mitochondrion 92.59 97.7
Bra022430.1-P Field mustard mitochondrion, plastid 90.41 88.49
AT3G19540.1 Thale cress plastid 91.72 86.8
PGSC0003DMT400066530 Potato plastid 75.6 73.83
KRG91072 Soybean plastid 74.29 73.65
Solyc01g107350.2.1 Tomato plastid 75.16 73.4
KRH35700 Soybean plastid 73.86 73.38
VIT_03s0091g00410.t01 Wine grape plastid 74.95 72.42
Bra014219.1-P Field mustard plastid 75.82 71.31
GSMUA_Achr4P14230_001 Banana cytosol, mitochondrion, nucleus, peroxisome 68.41 68.56
GSMUA_Achr4P32590_001 Banana cytosol 67.1 68.14
GSMUA_Achr3P02230_001 Banana cytosol, plastid 45.1 67.43
GSMUA_Achr6P16820_001 Banana cytosol 64.49 67.12
GSMUA_Achr10P... Banana plastid 59.91 65.63
GSMUA_Achr7P00620_001 Banana mitochondrion 57.3 64.62
GSMUA_Achr2P21540_001 Banana plastid 61.44 64.53
OQU79433 Sorghum cytosol 62.96 64.37
GSMUA_Achr10P... Banana cytosol 54.47 64.27
TraesCS5B01G078600.2 Wheat cytosol 59.91 63.95
HORVU5Hr1G018870.3 Barley cytosol, mitochondrion 63.62 63.48
Os03t0606100-01 Rice cytosol 60.57 63.18
GSMUA_Achr2P13470_001 Banana cytosol 60.35 63.1
GSMUA_Achr6P24020_001 Banana cytosol 55.12 63.09
TraesCS5D01G085100.1 Wheat cytosol 63.62 63.07
TraesCS4D01G076200.1 Wheat cytosol, mitochondrion 62.75 63.02
TraesCS4A01G237300.1 Wheat cytosol, mitochondrion 62.53 62.8
TraesCS4B01G077800.1 Wheat cytosol 62.53 62.8
TraesCS5A01G072300.1 Wheat cytosol 63.18 62.63
Os12t0581300-01 Rice cytosol 21.13 61.39
GSMUA_Achr7P26350_001 Banana cytosol, mitochondrion, peroxisome, plastid 63.18 60.42
Zm00001d030837_P001 Maize cytosol, mitochondrion 62.53 60.04
EER91248 Sorghum cytosol 61.0 59.96
TraesCS2D01G192800.1 Wheat nucleus 65.14 59.09
Os07t0591100-01 Rice nucleus 66.67 59.07
TraesCS2B01G211900.1 Wheat nucleus 65.14 58.74
TraesCS2A01G194900.1 Wheat nucleus 64.92 58.66
Zm00001d013746_P001 Maize cytosol 58.82 58.32
OQU92347 Sorghum mitochondrion, plastid 60.78 57.29
EER99634 Sorghum nucleus 64.71 56.9
Zm00001d047324_P001 Maize cytosol 59.7 55.92
Zm00001d006749_P001 Maize cytosol 63.83 55.7
Zm00001d022006_P001 Maize cytosol, plastid 64.71 53.32
HORVU4Hr1G013190.8 Barley mitochondrion 58.39 53.07
Zm00001d016585_P002 Maize extracellular, plasma membrane 28.98 52.57
Bra010924.1-P Field mustard mitochondrion, plastid 57.73 49.63
Bra023074.1-P Field mustard plastid 34.42 46.47
Bra012096.1-P Field mustard cytosol 36.38 45.26
Bra035117.1-P Field mustard mitochondrion 40.74 44.84
Bra005901.1-P Field mustard cytosol 35.73 44.57
Bra009139.1-P Field mustard cytosol 39.0 40.32
Bra008179.1-P Field mustard cytosol 34.42 39.9
Bra007185.1-P Field mustard cytosol, nucleus, plastid 37.47 39.63
Bra014725.1-P Field mustard nucleus 37.04 39.53
Bra003768.1-P Field mustard cytosol 33.77 39.14
Bra031821.1-P Field mustard cytosol 35.51 21.76
Protein Annotations
EnsemblPlants:Bra038214.1EnsemblPlants:Bra038214.1-PEnsemblPlantsGene:Bra038214InterPro:DUF620PANTHER:PTHR31300PANTHER:PTHR31300:SF1
PFAM:PF04788SEG:segUniParc:UPI0002544CA0UniProt:M4FAU9MapMan:27.4.5.3:
Description
AT3G19540 (E=9e-216) | unknown protein
Coordinates
chrA01:-:21579202..21580703
Molecular Weight (calculated)
49734.1 Da
IEP (calculated)
9.765
GRAVY (calculated)
-0.437
Length
459 amino acids
Sequence
(BLAST)
001: MEKKQGFFSA LRGLSPSRSR TRSRSVSPAR SSSPMTTLSW GRKNFTGSGA AGGYYVTQPE LLIERSGSLR PVMEGPDPDE EEEGGGGGSV GDSKRLGSGL
101: GNWVKGQLSR APSVAATAAH RRNDLRLLLG VMGAPLAPIH VSSSDPLPHL SIKNTPIETS SAQYILQQYT AASGGQKLKS SIKNAYAMGK LKMITSKIQT
201: ATRTVRNRNP SKAETGGFVL WQMNPDMWYV ELSVGGNKVR AGCNGKLVWR HTPWLGSHTA KGPVRPLRRG LQGLDPRTTA AMFAEAKCIG EKNVNGEDCF
301: ILKLSTDPET LKARSEGPAE IIRHVLSGYF SQKTGLLAHI EDSHLTRIQS NGGDTVFWET TYNSSLDDYR QVEGVMIAHS GHSVVTLFRF GEVAMSHTRT
401: KMEESWTIEE VAFNVPGLSL DCFIPPADLK TGSVADSCEY GQEERGKAAH RAKVAALEN
Best Arabidopsis Sequence Match ( AT3G19540.1 )
(BLAST)
001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV
Arabidopsis Description
AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.