Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G192800.1 | Wheat | nucleus | 99.02 | 99.41 |
| TraesCS2B01G211900.1 | Wheat | nucleus | 97.64 | 97.45 |
| EER99634 | Sorghum | nucleus | 89.37 | 86.97 |
| Os07t0591100-01 | Rice | nucleus | 86.81 | 85.14 |
| Zm00001d006749_P001 | Maize | cytosol | 85.83 | 82.89 |
| Zm00001d022006_P001 | Maize | cytosol, plastid | 88.78 | 80.97 |
| VIT_03s0091g00410.t01 | Wine grape | plastid | 68.5 | 73.26 |
| KRG91072 | Soybean | plastid | 64.57 | 70.84 |
| PGSC0003DMT400066530 | Potato | plastid | 65.35 | 70.64 |
| KRH35700 | Soybean | plastid | 64.17 | 70.56 |
| Solyc01g107350.2.1 | Tomato | plastid | 65.16 | 70.43 |
| TraesCS4A01G237300.1 | Wheat | cytosol, mitochondrion | 62.01 | 68.93 |
| KRH15430 | Soybean | plastid | 64.17 | 68.92 |
| KRH05611 | Soybean | plastid | 64.17 | 68.49 |
| TraesCS5A01G072300.1 | Wheat | cytosol | 61.81 | 67.82 |
| VIT_18s0001g09450.t01 | Wine grape | plastid | 62.6 | 67.8 |
| PGSC0003DMT400055468 | Potato | plastid | 62.4 | 67.45 |
| CDX95439 | Canola | mitochondrion | 57.28 | 66.9 |
| CDY50147 | Canola | mitochondrion | 57.68 | 66.74 |
| Zm00001d016585_P002 | Maize | extracellular, plasma membrane | 32.68 | 65.61 |
| Bra038214.1-P | Field mustard | mitochondrion, plastid | 58.66 | 64.92 |
| AT3G19540.1 | Thale cress | plastid | 61.81 | 64.74 |
| CDY16530 | Canola | plastid | 57.28 | 64.38 |
| CDY67693 | Canola | mitochondrion | 57.48 | 64.32 |
| CDY46168 | Canola | mitochondrion | 57.68 | 64.25 |
| Bra022430.1-P | Field mustard | mitochondrion, plastid | 59.06 | 63.97 |
| CDY32838 | Canola | plastid | 56.69 | 63.3 |
| Solyc04g078190.2.1 | Tomato | nucleus, plastid | 35.43 | 61.43 |
| Bra014219.1-P | Field mustard | plastid | 58.86 | 61.27 |
| AT1G49840.1 | Thale cress | plastid | 57.68 | 59.31 |
| AT1G27690.1 | Thale cress | plastid | 49.8 | 58.43 |
| CDY03939 | Canola | cytosol | 12.4 | 53.39 |
| CDX90103 | Canola | mitochondrion, plastid | 49.02 | 49.11 |
| CDY67976 | Canola | mitochondrion, plastid | 49.02 | 49.11 |
| Bra010924.1-P | Field mustard | mitochondrion, plastid | 50.98 | 48.5 |
| TraesCS4A01G020600.1 | Wheat | cytosol | 34.06 | 47.14 |
| TraesCS4A01G093200.1 | Wheat | cytosol, nucleus, plastid | 37.4 | 42.51 |
| TraesCS3A01G302500.1 | Wheat | cytosol | 30.91 | 40.89 |
| TraesCS1A01G133000.1 | Wheat | cytosol | 33.66 | 37.83 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G194900.1 | EnsemblPlantsGene:TraesCS2A01G194900 | InterPro:DUF620 | PANTHER:PTHR31300 | PANTHER:PTHR31300:SF5 | PFAM:PF04788 |
| SEG:seg | MapMan:27.4.5.3 | : | : | : | : |
Description
No Description!
Coordinates
chr2A:-:164703730..164705446
Molecular Weight (calculated)
54726.8 Da
IEP (calculated)
9.748
GRAVY (calculated)
-0.261
Length
508 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKERKQGFF AALKEEVVRG LSPARSRGKT PARSASPARM LIPRRRKAPP PPPEKQMEQQ QYLPEQLIAR SGSLRPGGEV LEPLIEGPDA DRLAAGDFVG
101: EDSGRREGFG HWVRGHLTRT PSMASASSAG PGGSSGSFRH SDLRLLLGVM GAPLAPISSN LADPLPLLSI KGTPIESSSA QYILQQYMAA SGGYKMLQSV
201: RNAYAMGKVR MVASEFETAT RVVKNRGPSG RGAAAVEQGG FVLWTMAPGM WYVELAVGGS KVHAGCNGRL VWRHTPWLGA HAAKGPVRPL RRVLQGLDPL
301: TTAGLFAEAR CVGEKKVNGE ECFILKLSAD PQTLKLRSEG PAEIIRHVLF GYFSQRTGLM VHIEDSHLTR IQPHSGGDAV YWETTISSCL EEYRAVEGIM
401: IAHAGRSAVT LFRFGEAAMS HTKTRMEEAW SIEEVAFNVP GLSVDCFIPP ADIRSGSVGE ACELPPQHGD RAKSTAVHPA RVAAAAERAH VNAGAGGRGE
501: KIVWRVEV
101: EDSGRREGFG HWVRGHLTRT PSMASASSAG PGGSSGSFRH SDLRLLLGVM GAPLAPISSN LADPLPLLSI KGTPIESSSA QYILQQYMAA SGGYKMLQSV
201: RNAYAMGKVR MVASEFETAT RVVKNRGPSG RGAAAVEQGG FVLWTMAPGM WYVELAVGGS KVHAGCNGRL VWRHTPWLGA HAAKGPVRPL RRVLQGLDPL
301: TTAGLFAEAR CVGEKKVNGE ECFILKLSAD PQTLKLRSEG PAEIIRHVLF GYFSQRTGLM VHIEDSHLTR IQPHSGGDAV YWETTISSCL EEYRAVEGIM
401: IAHAGRSAVT LFRFGEAAMS HTKTRMEEAW SIEEVAFNVP GLSVDCFIPP ADIRSGSVGE ACELPPQHGD RAKSTAVHPA RVAAAAERAH VNAGAGGRGE
501: KIVWRVEV
001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV
Arabidopsis Description
AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.