Factsheet for VIT_18s0001g09450.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0186g00090.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01
VIT_18s0001g10260.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27690.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT1G27690.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT1G27690.1	VIT_00s0186g00090.t01	AT3G07120.1	21798944
AT1G27690.1	VIT_18s0001g10260.t01	AT5G42940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055468	Potato	plastid	81.24	81.06
KRH15430	Soybean	plastid	81.24	80.55
KRH05611	Soybean	plastid	81.66	80.46
VIT_03s0091g00410.t01	Wine grape	plastid	79.53	78.53
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	74.2	75.98
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	48.19	73.62
GSMUA_Achr6P16820_001	Banana	cytosol	68.23	72.56
GSMUA_Achr10P...	Banana	cytosol	60.13	72.49
GSMUA_Achr4P32590_001	Banana	cytosol	69.08	71.68
Solyc04g078190.2.1	Tomato	nucleus, plastid	44.56	71.33
GSMUA_Achr7P00620_001	Banana	mitochondrion	61.41	70.76
Os12t0581300-01	Rice	cytosol	23.24	68.99
OQU79433	Sorghum	cytosol	65.67	68.6
GSMUA_Achr6P24020_001	Banana	cytosol	58.64	68.58
GSMUA_Achr10P...	Banana	plastid	60.98	68.26
TraesCS5B01G078600.2	Wheat	cytosol	62.47	68.14
HORVU5Hr1G018870.3	Barley	cytosol, mitochondrion	66.1	67.39
GSMUA_Achr2P21540_001	Banana	plastid	62.69	67.28
Os03t0606100-01	Rice	cytosol	63.11	67.27
AT1G27690.1	Thale cress	plastid	62.05	67.21
TraesCS4D01G076200.1	Wheat	cytosol, mitochondrion	65.46	67.18
TraesCS4B01G077800.1	Wheat	cytosol	65.46	67.18
TraesCS4A01G237300.1	Wheat	cytosol, mitochondrion	65.46	67.18
TraesCS5A01G072300.1	Wheat	cytosol	66.31	67.17
TraesCS5D01G085100.1	Wheat	cytosol	66.31	67.17
GSMUA_Achr2P13470_001	Banana	cytosol	62.05	66.29
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	67.38	65.83
EER91248	Sorghum	cytosol	63.75	64.03
Os07t0591100-01	Rice	nucleus	69.72	63.13
TraesCS2D01G192800.1	Wheat	nucleus	68.02	63.04
Zm00001d013746_P001	Maize	cytosol	62.05	62.85
Zm00001d030837_P001	Maize	cytosol, mitochondrion	63.97	62.76
TraesCS2B01G211900.1	Wheat	nucleus	68.02	62.67
TraesCS2A01G194900.1	Wheat	nucleus	67.8	62.6
EER99634	Sorghum	nucleus	69.3	62.26
OQU92347	Sorghum	mitochondrion, plastid	63.54	61.19
Zm00001d047324_P001	Maize	cytosol	62.47	59.8
CDY03939	Canola	cytosol	14.93	59.32
Zm00001d006749_P001	Maize	cytosol	66.1	58.94
Zm00001d022006_P001	Maize	cytosol, plastid	68.23	57.45
HORVU4Hr1G013190.8	Barley	mitochondrion	60.98	56.63
CDX90103	Canola	mitochondrion, plastid	59.49	55.03
Zm00001d016585_P002	Maize	extracellular, plasma membrane	29.64	54.94
Bra010924.1-P	Field mustard	mitochondrion, plastid	62.47	54.87
CDY67976	Canola	mitochondrion, plastid	59.28	54.83
VIT_19s0085g00900.t01	Wine grape	mitochondrion	42.86	51.8
VIT_04s0023g01510.t01	Wine grape	cytosol	35.82	46.28
VIT_13s0019g03180.t01	Wine grape	cytosol	40.3	44.37
VIT_18s0001g12320.t01	Wine grape	cytosol	34.12	43.01
VIT_08s0007g07110.t01	Wine grape	cytosol	37.74	26.82

Protein Annotations

EntrezGene:100252320	wikigene:100252320	MapMan:27.4.5.3	UniProt:A5B9D3	EMBL:AM451154	ProteinID:CAN63253
ProteinID:CAN63253.1	ProteinID:CCB45774	ProteinID:CCB45774.1	InterPro:DUF620	EMBL:FN595227	EntrezGene:LOC100252320
wikigene:LOC100252320	PFAM:PF04788	PANTHER:PTHR31300	PANTHER:PTHR31300:SF7	UniParc:UPI00015206EB	ArrayExpress:VIT_18s0001g09450
EnsemblPlantsGene:VIT_18s0001g09450	EnsemblPlants:VIT_18s0001g09450.t01	unigene:Vvi.14351	RefSeq:XP_002285118	RefSeq:XP_002285118.1	SEG:seg

Description

No Description!

Coordinates

chr18:-:7901902..7904564

Molecular Weight (calculated)

51289.5 Da

IEP (calculated)

9.458

GRAVY (calculated)

-0.322

Length

469 amino acids

Sequence
(BLAST)

001: MERKQGFFSA LKQEVVRGLS PGRSRARCES PMSRLRRRSK KQNQVPQPDL LIGRSGNLRP VETLSPLMEG PDPEGSECGD SRVEGGWGQW MKGQLSRAPS
101: VSSSAYKGSD DLRLLLGVMG APLAPVHVSS TDPLPHLSIK NTPIETSSAQ YILQQYTAAS GGQKLQSSIH NAYAMGKVKM LAAEFETANK VIKTRNSSKA
201: AEGGFVLWQM NPDMWYVELA LGGSKVHAGS NGNLVWRHTP WLGAHAAKGP VRPLRRALQG LDPRTTASMF TNARCIGEKR INGDDCFILK LCADPVTLKA
301: RSEGPAEIIR HVLLGYFSQK TGLLVHLEDS HLTRIQTNGG DAAYWETTIN SFLDDYRPVE GIMIAHSGRS VVTLFRFGET AMSHTKTKME EAWSIEEVAF
401: NVPGLSLDCF IPPAELRFGS VSESCEFPQG ERVKTAVAAA AAAAYRAKVA ALEKSHESNV NKIIWKMDV

Best Arabidopsis Sequence Match ( AT3G19540.1 )
(BLAST)

001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV

Arabidopsis Description

AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.