Factsheet for HORVU5Hr1G018870.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G001280.1
HORVU1Hr1G049430.2
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G064710.1
HORVU3Hr1G079210.4
HORVU3Hr1G093580.1
HORVU4Hr1G026290.3
HORVU4Hr1G069780.1
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4
HORVU5Hr1G075810.1
HORVU5Hr1G123180.1
HORVU6Hr1G027660.9
HORVU6Hr1G076210.5
HORVU7Hr1G038980.5
HORVU7Hr1G053470.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27690.1	HORVU0Hr1G001280.1	AT2G41100.1	17360592
AT1G27690.1	HORVU2Hr1G016740.4	AT2G41100.1	17360592
AT1G27690.1	HORVU3Hr1G038010.1	AT2G41100.1	17360592
AT1G27690.1	HORVU3Hr1G079210.4	AT2G41100.1	17360592
AT1G27690.1	HORVU4Hr1G026290.3	AT2G41100.1	17360592
AT1G27690.1	HORVU5Hr1G014060.1	AT2G41100.1	17360592
AT1G27690.1	HORVU5Hr1G014070.2	AT2G41100.1	17360592
AT1G27690.1	HORVU5Hr1G044710.4	AT2G41100.1	17360592
AT1G27690.1	HORVU1Hr1G049430.2	AT3G07120.1	21798944
AT1G27690.1	HORVU3Hr1G064710.1	AT3G07120.1	21798944
AT1G27690.1	HORVU3Hr1G093580.1	AT3G07120.1	21798944
AT1G27690.1	HORVU4Hr1G069780.1	AT3G07120.1	21798944
AT1G27690.1	HORVU5Hr1G075810.1	AT3G07120.1	21798944
AT1G27690.1	HORVU5Hr1G123180.1	AT3G07120.1	21798944
AT1G27690.1	HORVU7Hr1G053470.4	AT3G07120.1	21798944
AT1G49840.1	HORVU6Hr1G027660.9	AT1G21840.1	21798944
AT3G19540.1	HORVU6Hr1G076210.5	AT5G62880.1	21798944
AT3G19540.1	HORVU7Hr1G038980.5	AT5G62880.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G078600.2	Wheat	cytosol	91.09	97.44
TraesCS5D01G085100.1	Wheat	cytosol	98.04	97.41
TraesCS5A01G072300.1	Wheat	cytosol	97.61	96.98
Os12t0581300-01	Rice	cytosol	31.74	92.41
OQU79433	Sorghum	cytosol	85.87	87.97
Zm00001d030837_P001	Maize	cytosol, mitochondrion	81.74	78.66
VIT_03s0091g00410.t01	Wine grape	plastid	71.74	69.47
HORVU4Hr1G013190.8	Barley	mitochondrion	75.43	68.71
KRG91072	Soybean	plastid	69.13	68.68
KRH35700	Soybean	plastid	68.91	68.61
GSMUA_Achr7P00620_001	Banana	mitochondrion	60.43	68.3
PGSC0003DMT400066530	Potato	plastid	69.57	68.09
Solyc01g107350.2.1	Tomato	plastid	69.13	67.66
CDY50147	Canola	mitochondrion	63.91	66.97
CDX95439	Canola	mitochondrion	63.26	66.9
VIT_18s0001g09450.t01	Wine grape	plastid	67.39	66.1
PGSC0003DMT400055468	Potato	plastid	66.52	65.11
CDY67693	Canola	mitochondrion	63.91	64.76
KRH15430	Soybean	plastid	66.3	64.48
CDY46168	Canola	mitochondrion	63.48	64.04
KRH05611	Soybean	plastid	66.09	63.87
Bra038214.1-P	Field mustard	mitochondrion, plastid	63.48	63.62
Bra022430.1-P	Field mustard	mitochondrion, plastid	64.57	63.33
AT3G19540.1	Thale cress	plastid	66.09	62.68
CDY16530	Canola	plastid	60.22	61.28
CDY32838	Canola	plastid	59.78	60.44
AT1G27690.1	Thale cress	plastid	54.78	58.2
AT1G49840.1	Thale cress	plastid	61.96	57.69
Bra014219.1-P	Field mustard	plastid	61.09	57.58
Solyc04g078190.2.1	Tomato	nucleus, plastid	36.3	57.0
CDY03939	Canola	cytosol	14.57	56.78
CDY67976	Canola	mitochondrion, plastid	53.91	48.92
CDX90103	Canola	mitochondrion, plastid	53.7	48.72
Bra010924.1-P	Field mustard	mitochondrion, plastid	55.65	47.94
HORVU3Hr1G073950.2	Barley	plastid	36.09	38.43
HORVU4Hr1G060590.5	Barley	mitochondrion	41.74	38.4

Protein Annotations

EMBL:AK358681	EMBL:AK363184	EnsemblPlants:HORVU5Hr1G018870.3	EnsemblPlantsGene:HORVU5Hr1G018870	InterPro:DUF620	PANTHER:PTHR31300
PANTHER:PTHR31300:SF20	PFAM:PF04788	SEG:seg	UniParc:UPI00020053A3	UniProt:F2D472	MapMan:27.4.5.3

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D472]

Coordinates

chrchr5H:-:79316702..79319904

Molecular Weight (calculated)

49336.3 Da

IEP (calculated)

9.125

GRAVY (calculated)

-0.199

Length

460 amino acids

Sequence
(BLAST)

001: MDKKQGFFSA LRGEVARGLS PARARRRAEE AAAAKAALRY AGGGGGGEAL APLMEGPDPE EAGAGRARRD GWGRWVRGQL ARAPSSGPVA SAAGAGAARR
101: NDLRMLLGVM GAALAPVHVC AAEPLPHLSI KDTPIETSSA QYILQQYLAA SGGQKLLSSV RNSYAMGKVR MVATECETAG RVVRNRMGAR CAEPGRFVLW
201: QMAPEMWYIE LAVGGSKVHA GCNGKLVWRH TPWLGAHSAK GPVRPLRRSL QGLDPLTTAS MFAGARCIGE RKVNGDDCFI LKLCADPETL RARSEGLAEI
301: IRHVLFGYFS QKTGLLVHLE DSHLTRIQST TGGDAVYWET TINSFIEDYR PVEGIMIAHS GRSAVTLFRF GEVAMNHTKT RMEEAWSIEE VAFNVPGLSM
401: DCFIPPTDIK SGSISETVEL PQSGKSKAGG LLPCHGAKVA ALEKADDNVA WSGTLQRDCK

Best Arabidopsis Sequence Match ( AT3G19540.1 )
(BLAST)

001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV

Arabidopsis Description

AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.