Factsheet for PGSC0003DMT400055468

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400020528
PGSC0003DMT400039849
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27690.1	PGSC0003DMT400014123	AT2G41100.1	17360592
AT1G27690.1	PGSC0003DMT400018569	AT2G41100.1	17360592
AT1G27690.1	PGSC0003DMT400046278	AT2G41100.1	17360592
AT1G27690.1	PGSC0003DMT400054299	AT2G41100.1	17360592
AT1G27690.1	PGSC0003DMT400058435	AT2G41100.1	17360592
AT1G27690.1	PGSC0003DMT400070437	AT2G41100.1	17360592
AT1G27690.1	PGSC0003DMT400097662	AT2G41100.1	17360592
AT1G27690.1	PGSC0003DMT400020528	AT5G42940.1	21798944
AT1G27690.1	PGSC0003DMT400039849	AT5G42940.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g078190.2.1	Tomato	nucleus, plastid	56.81	91.13
VIT_18s0001g09450.t01	Wine grape	plastid	81.06	81.24
KRH15430	Soybean	plastid	79.36	78.86
KRH05611	Soybean	plastid	79.36	78.36
PGSC0003DMT400066530	Potato	plastid	78.09	78.09
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	71.49	73.36
GSMUA_Achr6P16820_001	Banana	cytosol	68.3	72.79
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	47.23	72.31
GSMUA_Achr4P32590_001	Banana	cytosol	68.3	71.02
GSMUA_Achr10P...	Banana	cytosol	57.66	69.67
Os12t0581300-01	Rice	cytosol	23.19	68.99
GSMUA_Achr6P24020_001	Banana	cytosol	58.09	68.08
GSMUA_Achr10P...	Banana	plastid	60.64	68.02
GSMUA_Achr7P00620_001	Banana	mitochondrion	58.09	67.08
AT1G27690.1	Thale cress	plastid	61.7	66.97
OQU79433	Sorghum	cytosol	63.83	66.82
TraesCS5B01G078600.2	Wheat	cytosol	61.06	66.74
HORVU5Hr1G018870.3	Barley	cytosol, mitochondrion	65.11	66.52
GSMUA_Achr2P21540_001	Banana	plastid	61.7	66.36
TraesCS5A01G072300.1	Wheat	cytosol	65.32	66.31
Os03t0606100-01	Rice	cytosol	61.91	66.14
TraesCS5D01G085100.1	Wheat	cytosol	65.11	66.09
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	67.45	66.04
TraesCS4D01G076200.1	Wheat	cytosol, mitochondrion	63.62	65.43
TraesCS4B01G077800.1	Wheat	cytosol	63.62	65.43
TraesCS4A01G237300.1	Wheat	cytosol, mitochondrion	63.62	65.43
GSMUA_Achr2P13470_001	Banana	cytosol	60.85	65.15
EER91248	Sorghum	cytosol	62.55	62.95
TraesCS2D01G192800.1	Wheat	nucleus	67.66	62.85
Os07t0591100-01	Rice	nucleus	68.94	62.55
TraesCS2B01G211900.1	Wheat	nucleus	67.66	62.48
TraesCS2A01G194900.1	Wheat	nucleus	67.45	62.4
Zm00001d013746_P001	Maize	cytosol	60.85	61.77
EER99634	Sorghum	nucleus	68.3	61.49
Zm00001d030837_P001	Maize	cytosol, mitochondrion	62.34	61.3
OQU92347	Sorghum	mitochondrion, plastid	63.19	60.99
Zm00001d047324_P001	Maize	cytosol	62.55	60.0
Zm00001d006749_P001	Maize	cytosol	65.96	58.94
CDY03939	Canola	cytosol	14.68	58.47
Zm00001d022006_P001	Maize	cytosol, plastid	67.02	56.55
Zm00001d016585_P002	Maize	extracellular, plasma membrane	30.21	56.13
CDX90103	Canola	mitochondrion, plastid	59.57	55.23
Bra010924.1-P	Field mustard	mitochondrion, plastid	62.55	55.06
HORVU4Hr1G013190.8	Barley	mitochondrion	59.15	55.05
CDY67976	Canola	mitochondrion, plastid	59.36	55.03
PGSC0003DMT400066079	Potato	cytosol	36.6	48.86
PGSC0003DMT400036213	Potato	cytosol	24.68	45.67
PGSC0003DMT400069768	Potato	cytosol	18.94	44.28
PGSC0003DMT400059652	Potato	cytosol	38.3	42.96
PGSC0003DMT400038589	Potato	cytosol, nucleus, peroxisome	33.62	42.36
PGSC0003DMT400069765	Potato	cytosol	39.15	41.44
PGSC0003DMT400013218	Potato	cytosol	32.34	39.28

Protein Annotations

EnsemblPlants:PGSC0003DMT400055468	EnsemblPlantsGene:PGSC0003DMG400021537	EntrezGene:102578171	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF7
PFAM:PF04788	PGSC:PGSC0003DMG400021537	RefSeq:XP_006362073.1	SEG:seg	UniParc:UPI0002965AD5	UniProt:M1BXY8
MapMan:27.4.5.3	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021537]

Coordinates

chr4:-:67339897..67342675

Molecular Weight (calculated)

51316.4 Da

IEP (calculated)

9.420

GRAVY (calculated)

-0.357

Length

470 amino acids

Sequence
(BLAST)

001: MEKKQGFFSA LKDEVVRGLS PAKSRGRSPS PSGSGLLRRR KGNQAPQPEV YISRSGSLRP CVETLSPLME GPDPNGSEVG DSKSDRWWMK GQLCRAPSVS
101: TSGSGLQRSD LRLLLGVLGA PLAPVHVSNN DPLPHLSIKD TPIETSSAQY ILQQYTAASG GQKLQNTMYN AYAMGKVRMM ASDIETATKV IKNRNSSKTA
201: ESGGFVLWQM NPDMWYVELA LGSSKVHAGC NGKLVWRHTP WLGAHAAKGP VRPLRRALQG LDPRTTANMF ASAKCTGEKK INGEDCFILK LCADPHTLKA
301: RSEGPAEIIR HVLFGYFSQK TGLLVHLEDS HLTRIQTNGG DAVYWETTIN SFLDDYRPVE GIMIAHSGRS VVTLFRFGET AMSHTKTRME EAWTIEEVAF
401: NVPGLSEECF IPPAELRFSS IGEACELSQG ERVKTTVSAA AAAAYRAKVA ALDKSRDGSN VNNIVLKMNY

Best Arabidopsis Sequence Match ( AT3G19540.1 )
(BLAST)

001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV

Arabidopsis Description

AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.