Factsheet for PGSC0003DMT400066079

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g051920.2.1	Tomato	cytosol	98.86	98.58
KRG96347	Soybean	cytosol	70.45	70.25
KRH68081	Soybean	cytosol	69.89	68.91
KRH71794	Soybean	cytosol	69.32	67.4
KRH38019	Soybean	peroxisome	67.05	65.37
CDX81011	Canola	cytosol	60.23	57.61
CDY55767	Canola	cytosol	60.23	57.61
Bra005901.1-P	Field mustard	cytosol	59.94	57.34
AT5G06610.1	Thale cress	cytosol	59.09	56.52
GSMUA_Achr3P29550_001	Banana	cytosol	53.41	52.81
Zm00001d027816_P001	Maize	cytosol	49.15	47.92
EER95445	Sorghum	cytosol	49.43	47.41
TraesCS4B01G282900.1	Wheat	cytosol	49.15	47.4
Os03t0167400-00	Rice	cytosol	49.15	47.27
TraesCS4D01G281900.1	Wheat	cytosol	48.86	47.12
TraesCS4A01G020600.1	Wheat	cytosol	48.86	46.87
VIT_08s0007g07110.t01	Wine grape	cytosol	76.42	40.76
PGSC0003DMT400036213	Potato	cytosol	28.98	40.16
Os10t0411100-00	Rice	cytosol, peroxisome, plasma membrane	47.73	37.5
PGSC0003DMT400066530	Potato	plastid	49.72	37.23
PGSC0003DMT400055468	Potato	plastid	48.86	36.6
PGSC0003DMT400069768	Potato	cytosol	20.74	36.32
PGSC0003DMT400059652	Potato	cytosol	42.9	36.04
PGSC0003DMT400038589	Potato	cytosol, nucleus, peroxisome	35.8	33.78
PGSC0003DMT400069765	Potato	cytosol	42.33	33.56
PGSC0003DMT400013218	Potato	cytosol	36.08	32.82

Protein Annotations

EnsemblPlants:PGSC0003DMT400066079	EnsemblPlantsGene:PGSC0003DMG400025725	EntrezGene:102583966	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF3
PFAM:PF04788	PGSC:PGSC0003DMG400025725	RefSeq:XP_006367753.1	SEG:seg	UniParc:UPI000294E862	UniProt:M1CEZ4
MapMan:27.4.5.3	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400025725]

Coordinates

chr3:+:13981183..13983804

Molecular Weight (calculated)

38667.4 Da

IEP (calculated)

7.282

GRAVY (calculated)

-0.040

Length

352 amino acids

Sequence
(BLAST)

001: MIRLAPLSEV PTNDEETHPS SSSSSWRNWL KTHFSLIFIT KKSDLRILLS VLGCPLFPVS SNPKIPISQV SSSAEYIIEH FTAASGCRKI QGVVKNMYVS
101: GKVSMAIVDT SSPASTISQK GCFVLWQMVP NKWLIELVVA AHKVVAGSDG NVAWRHTPWL GSHAAKGAIR PLRRALQGLD PLAVAAVFSA AEYIGEKNIL
201: GIDSFVLKLS ANHPDLTERS DNTAEMIKHV VFGYFSQRSG LLVYVEDSYL TRIQSPGSPP TYWETTMGTK VEDYRPVEGV MIAHSGCSSV IITRFGDNLK
301: AGPAITRMEE TYTIDDVAFN VPGLSIDSFI PPQGLIKGYP EENLDWRSPI DR

Best Arabidopsis Sequence Match ( AT5G06610.1 )
(BLAST)

001: MQRLAPLMEE PIDEEDQEEE RGGRKGSTRS KSWKKWIKTQ LQFIVFPKKP DMKLLLSVMG CPLFPVPPLS KISLQQVSSS AQYIIQQFAA ATGCKKLAGE
101: IKNTFVTGKI TMTMVSDINS STAVSSASSV SHKGCFVMWQ MLPEKWLIEL VGGGHKVSAG SDGEITWRYT PWLGDHAAKG AIRPLRRALQ GLDPLTISSV
201: FSSAQFVGEK EINGKDCFIL KLSTDQIDLS KRSDSTAEMI KHVAFGYFSQ KSGLLICLED SSLTRIQIPG TVPTYWETSM SSWMEDYRAI EGSEVVIAHS
301: GKTDVLISRF GETLKGGISV TRMEEKWTID DVAFDVPGLS VDCFIPPKEM KMDFHHQDAQ KHLPNYNT

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FG09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.