Factsheet for PGSC0003DMT400013218

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g080220.2.1	Tomato	cytosol	96.38	96.38
PGSC0003DMT400036213	Potato	cytosol	50.13	76.38
VIT_18s0001g12320.t01	Wine grape	cytosol	58.91	61.29
CDY68684	Canola	cytosol, mitochondrion	44.7	60.49
KRH50361	Soybean	cytosol	58.66	59.42
KRH51867	Soybean	cytosol	57.88	58.64
CDX68146	Canola	cytosol	55.81	57.14
KRH05801	Soybean	cytosol	55.81	56.1
Bra003768.1-P	Field mustard	cytosol	57.36	56.06
Bra008179.1-P	Field mustard	cytosol	57.11	55.81
CDY46011	Canola	cytosol	56.85	55.56
CDY37259	Canola	cytosol	56.85	55.56
GSMUA_Achr4P27870_001	Banana	cytosol	54.26	55.26
AT1G75160.1	Thale cress	cytosol	56.33	55.19
GSMUA_Achr2P13560_001	Banana	cytosol	53.75	55.17
PGSC0003DMT400038589	Potato	cytosol, nucleus, peroxisome	52.2	54.16
Zm00001d012676_P001	Maize	cytosol	50.13	50.79
TraesCS3A01G302500.1	Wheat	cytosol	50.39	50.78
EES03659	Sorghum	cytosol	50.13	50.52
TraesCS3B01G333900.1	Wheat	cytosol	50.13	50.39
OQU89854	Sorghum	cytosol	49.87	50.26
TraesCS3D01G299300.1	Wheat	cytosol	49.87	50.26
Zm00001d043364_P001	Maize	mitochondrion	15.5	49.59
PGSC0003DMT400059652	Potato	cytosol	50.13	46.3
HORVU3Hr1G073950.2	Barley	plastid	50.13	44.91
PGSC0003DMT400069765	Potato	cytosol	50.65	44.14
PGSC0003DMT400069768	Potato	cytosol	21.71	41.79
PGSC0003DMT400066079	Potato	cytosol	32.82	36.08
PGSC0003DMT400066530	Potato	plastid	40.05	32.98
PGSC0003DMT400055468	Potato	plastid	39.28	32.34

Protein Annotations

EnsemblPlants:PGSC0003DMT400013218	EnsemblPlantsGene:PGSC0003DMG400005161	EntrezGene:102585210	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF4
PFAM:PF04788	PGSC:PGSC0003DMG400005161	RefSeq:XP_006341923.1	UniParc:UPI0002966ECE	UniProt:M1A2I1	MapMan:27.4.5.3

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400005161]

Coordinates

chr4:+:69606636..69609511

Molecular Weight (calculated)

43262.5 Da

IEP (calculated)

6.978

GRAVY (calculated)

-0.350

Length

387 amino acids

Sequence
(BLAST)

001: MRKLCPNLDK EDGLDTVLEV PLPEEMFSKT GGCSAAIRWK NMLNLMRADK LPDRSKAVAS GNNDQFMFLL KIVGSALIPF QVQLDHAISL PVRDGCIKAS
101: SAKYIVQQYL AASGGQAALN SINSMYAVGQ LQMAMSDIQQ SGNQMNSKRT CEDGGFVLWQ KNPDLWFLEF VVSDCKVSAG SNGTVAWSHS STNSNASKGP
201: PRPLRRFFQG LDPRSTANLF LNAVCIGEKK IKDEGCFILK LETSKDMLKA QSTANTEVVH HTIWGYFSQR LGVLIQFEDT KLVRLKSAKD NNDSIFWETS
301: MESTLKDYRY IEGINIAHSG RTAATIYRYG KNIDYRAKVE ETWKIEEIDF NISGLSMDCF LPPADVNKEN EQEWDSRASL AENRTVC

Best Arabidopsis Sequence Match ( AT1G75160.1 )
(BLAST)

001: MKMRKLCPNL DREDGLETVL EVPVPEEMFT KMGSNAQGRW RNMHALMKAH AVVTAVATDV RTPASSSSMS NVNMHLQSKS DNEFVALLKI VGSPLIPFHV
101: PLEFCLSRPI NDTSIEASTA KYIVQQYVAA CGGPTALNAV KSMYAVGQVR MQGSEMVAGE DEGTGTPVRL GKGSFEVGGF VLWQKNPNLW FLELVVSGFK
201: ISAGSDGKVA WNQSSTQPSQ AHRGPPRPLR RFFQGLDPRC TASLFLDAVC IGEQPVNGED CFVLKVETPS DILKAQCSPN TEVIHHTVWG YFSQRTGLLV
301: KFGDTKLVRV KSGRGKNDGV FWETSMESII DDYIFVDAVN IAHGGQTVTT LYRYGGAVNH RRRIEEKWRI EEVDFNICGL CLESFLPPSD INNDH

Arabidopsis Description

Protein of unknown function (DUF620) [Source:TAIR;Acc:AT1G75160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.