Factsheet for PGSC0003DMT400069765

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069768	Potato	cytosol	44.59	98.51
Solyc05g052860.2.1	Tomato	cytosol	94.37	94.58
PGSC0003DMT400059652	Potato	cytosol	72.97	77.33
VIT_13s0019g03180.t01	Wine grape	cytosol	68.47	71.36
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	55.41	64.91
KRH31070	Soybean	cytosol	61.94	63.07
KRG97798	Soybean	cytosol	61.71	62.41
CDX70123	Canola	cytosol	61.71	61.85
KRH15018	Soybean	cytosol	59.46	61.83
AT5G05840.1	Thale cress	cytosol	61.04	61.73
Bra009139.1-P	Field mustard	cytosol	61.71	61.71
CDX98870	Canola	cytosol	61.49	61.49
KRH73113	Soybean	cytosol	58.33	61.08
GSMUA_Achr5P28960_001	Banana	cytosol	59.46	60.55
GSMUA_Achr6P33890_001	Banana	cytosol	50.0	57.96
Os03t0267500-01	Rice	plasma membrane	57.43	57.82
EER95119	Sorghum	cytosol	56.53	56.66
TraesCS4B01G211300.1	Wheat	cytosol, nucleus, plastid	56.08	55.83
TraesCS4A01G093200.1	Wheat	cytosol, nucleus, plastid	56.08	55.7
TraesCS4D01G211900.1	Wheat	cytosol, nucleus, plastid	56.08	55.33
Zm00001d028565_P002	Maize	cytosol	56.98	55.0
PGSC0003DMT400036213	Potato	cytosol	31.08	54.33
Zm00001d047840_P001	Maize	cytosol, peroxisome, plastid	54.5	53.19
PGSC0003DMT400038589	Potato	cytosol, nucleus, peroxisome	43.92	52.28
AT3G55720.1	Thale cress	nucleus	51.13	51.83
Bra007185.1-P	Field mustard	cytosol, nucleus, plastid	50.45	51.61
CDY27272	Canola	cytosol, nucleus, plastid	50.45	51.61
Bra014725.1-P	Field mustard	nucleus	49.1	50.7
PGSC0003DMT400013218	Potato	cytosol	44.14	50.65
CDX76076	Canola	cytosol, nucleus, plastid	45.95	50.49
CDY02955	Canola	cytosol, nucleus, plastid	45.95	50.49
HORVU4Hr1G060590.5	Barley	mitochondrion	56.31	50.0
PGSC0003DMT400066079	Potato	cytosol	33.56	42.33
PGSC0003DMT400066530	Potato	plastid	41.89	39.57
PGSC0003DMT400055468	Potato	plastid	41.44	39.15

Protein Annotations

EnsemblPlants:PGSC0003DMT400069765	EnsemblPlantsGene:PGSC0003DMG401027132	EntrezGene:102591372	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF2
PFAM:PF04788	PGSC:PGSC0003DMG401027132	RefSeq:XP_006355678.1	SEG:seg	UniParc:UPI000294A2D6	UniProt:M1CL40
MapMan:27.4.5.3	:	:	:	:	:

Description

Lipase [Source:PGSC_GENE;Acc:PGSC0003DMG401027132]

Coordinates

chr5:+:48147310..48150665

Molecular Weight (calculated)

49756.0 Da

IEP (calculated)

6.769

GRAVY (calculated)

-0.478

Length

444 amino acids

Sequence
(BLAST)

001: MRTLCPNLDN EDGLETVLEV PIPEEMFVNS SHKNHVKSWQ NMKSWIKSHS GNHHHHHHDN YYYKSSAVSV IGGRNAEIQL LLGVVAAPLI PHPIKCNNHS
101: LNKKINDHPI EASMAKYIVQ QYIAAAGGEH ALNSINSMYA MGKVKMMASE FIEGDGLGLN NGKVMKIKTA KNGTGEMGGF VLWQKRPDLW SIELVVSGCK
201: ISAGSDGKVS WRQTPWHHSH ASRGPARPLR RSLQGLDPRS TADMFSDSIC IGEKPVHGED CFVLKFEADP SSLKARSSSN VEIMRHTVWG YFSQRTGLLV
301: QLEDSHLLRL KSPKDDVFWE TTMESLIQEY RTIDGVNIAH AGKTCVSLFR FGENSEGHTR TRMEEVWTIE EVDFNIKGLS LDCFLPPSDL KKDDDQEIIS
401: DDDDINKNSR LESKNIIHHV NNPRFITAIK GAAKIVAIDQ DSED

Best Arabidopsis Sequence Match ( AT5G05840.1 )
(BLAST)

001: MRKLCPNYNL EDGLETVLEV PMPEELFAAS KTKPGWNQMK SYWSKPTATA TGTATATNMT RLFGGRNAEI QLLLGVVGAP LIPLPVQPDH HNDYENPIHK
101: DIKDQPLEMS MAQYIVKQYI AAVGGDRALN AVESMYAMGK VRMTASEFCT GEGSLNSKMV KARSIKSGGG EVGGFVLWQK GIELWCLELV VSGCKISAGS
201: DAKVAWRQTP WHPSHASRGP PRPLRRFLQG LDPKSTANLF ARSVCMGEKK INDEDCFILK LDAEPSALKA RSSSNVEIIR HTVWGCFSQR TGLLIQLEDS
301: HLLRIKAQDD NSIFWETTME SLIQDYRTVD GILVAHAGKS SVSLFRFGEN SDNHSRTRME ETWEIEEMDF NIKGLSMDCF LPPSDLKKDD DEEEEIECGL
401: AANNEKLPMK IRSASLRISS SKVLAIVEEE DESEVTEET

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FFJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.