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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • plastid 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:cytosol, nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY27272 Canola cytosol, nucleus, plastid 99.54 99.54
Bra014725.1-P Field mustard nucleus 88.94 89.77
AT3G55720.1 Thale cress nucleus 89.17 88.36
VIT_13s0019g03180.t01 Wine grape cytosol 55.3 56.34
Solyc03g078650.2.1 Tomato cytosol, nucleus, plastid 53.23 55.0
PGSC0003DMT400059652 Potato cytosol 53.0 54.89
KRH73113 Soybean cytosol 52.3 53.54
Bra009139.1-P Field mustard cytosol 53.92 52.7
GSMUA_Achr11P... Banana cytosol, nucleus, plastid 45.85 52.51
KRH15018 Soybean cytosol 51.61 52.46
KRG97798 Soybean cytosol 52.3 51.71
KRH31070 Soybean cytosol 51.61 51.38
Solyc05g052860.2.1 Tomato cytosol 51.84 50.79
PGSC0003DMT400069765 Potato cytosol 51.61 50.45
GSMUA_Achr5P28960_001 Banana cytosol 48.62 48.39
GSMUA_Achr6P33890_001 Banana cytosol 42.4 48.04
Bra008179.1-P Field mustard cytosol 43.55 47.73
Bra012096.1-P Field mustard cytosol 40.09 47.15
Bra003768.1-P Field mustard cytosol 42.4 46.46
TraesCS4B01G211300.1 Wheat cytosol, nucleus, plastid 47.7 46.41
PGSC0003DMT400069768 Potato cytosol 21.43 46.27
TraesCS4A01G093200.1 Wheat cytosol, nucleus, plastid 47.23 45.86
Os03t0267500-01 Rice plasma membrane 46.31 45.58
TraesCS4D01G211900.1 Wheat cytosol, nucleus, plastid 47.23 45.56
Bra023074.1-P Field mustard plastid 35.25 45.0
EER95119 Sorghum cytosol 45.16 44.24
Zm00001d047840_P001 Maize cytosol, peroxisome, plastid 46.08 43.96
Zm00001d028565_P002 Maize cytosol 46.31 43.7
HORVU4Hr1G060590.5 Barley mitochondrion 47.0 40.8
Bra038214.1-P Field mustard mitochondrion, plastid 39.63 37.47
Bra022430.1-P Field mustard mitochondrion, plastid 40.32 37.31
Bra014219.1-P Field mustard plastid 39.17 34.84
Bra005901.1-P Field mustard cytosol 27.88 32.88
Bra035117.1-P Field mustard mitochondrion 30.65 31.89
Bra010924.1-P Field mustard mitochondrion, plastid 37.1 30.15
Bra031821.1-P Field mustard cytosol 39.63 22.96
Protein Annotations
EnsemblPlants:Bra007185.1EnsemblPlants:Bra007185.1-PEnsemblPlantsGene:Bra007185InterPro:DUF620PANTHER:PTHR31300PANTHER:PTHR31300:SF2
PFAM:PF04788SEG:segUniParc:UPI0002542AA1UniProt:M4CSJ3MapMan:27.4.5.3:
Description
AT3G55720 (E=4e-215) | unknown protein
Coordinates
chrA09:+:27830141..27831939
Molecular Weight (calculated)
47697.9 Da
IEP (calculated)
5.155
GRAVY (calculated)
-0.323
Length
434 amino acids
Sequence
(BLAST)
001: MRTLCPNFDR EDGLETVLEV PMPEELFCSE NNKTGAWRSV KSSLLRSPPD NNSSLATLFG GRDAQIQMLL GIVGAPLIPL PVSSDHDVLD HPISKLIKNQ
101: SIEAAMAKYI VKQYTAAAGG ETALAGVESM YAMGKVKMGV TEFCAAKTLI GKRKKKMLKI RNVNGNGGEV GGFVLWKKGS SQWSLELVVS GCKVSAGCDG
201: NVAWKQSPWL EHSQASNEPS GPLRRFLQGL DPKTTANMFA GSVCVGEKAV NEEECFVLKL ETQPSGLKSR SKRGMETVKH TVWGCFSQRT GLLVQLEDTY
301: LVRIKTGPEE EDVVLWETTS ETMIQDYKSV DGIQIAHKGR TRVSLLRLDE SLESHSKTTM EESWEIEEVG FNVKGLSSDF FLPPGDLCAK ENEESEFSFG
401: DYTSPMMIPL KVSTDSWNLK SSKVTAIEDF GESE
Best Arabidopsis Sequence Match ( AT3G55720.1 )
(BLAST)
001: MRTLCPNFDR EDGLETVLEV PMPEELFCSD NNKSGAWRSV KSSLLRSPPD NSSSLATLFG GRDSQIQMLL GIVGAPSIPL PISSDQAKID HPISNLIKNQ
101: SIESAMAKYI VKQYTAAAGG EMALDAVESM YAMGKVKMGV TEFCAAKTLN GKRKKKMVRI RNVNNNNGNG GEMGGFVLWK KGSSQWSLEL VVSGCKVSAG
201: CDGNVDWRQS PWLAHSHASN EPSGPLRRFL QGLDPKTTAN LFAGSVCVGE KAVNNEECFV LKLETQPSGL KSRSKSGMET VKHTVWGCFG QRTGLLVQLE
301: DTYLVRIKTG LEDEDMVLWE TTSETLIQDY KSIDGIQIAH RGKTRVSLLR LDESLESHSK TTMEESWEIE EVGFNVKGLS SDFFLPPGDL CIKEEEETGF
401: SFGDYTSPML LPLKVSTTSW KIKSSKVTAI EDFGEFEG
Arabidopsis Description
Replication factor C subunit, putative (DUF620) [Source:UniProtKB/TrEMBL;Acc:Q9M050]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.