Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007185.1-P | Field mustard | cytosol, nucleus, plastid | 88.36 | 89.17 |
| CDY27272 | Canola | cytosol, nucleus, plastid | 87.9 | 88.71 |
| CDY02955 | Canola | cytosol, nucleus, plastid | 80.37 | 87.13 |
| Bra014725.1-P | Field mustard | nucleus | 84.93 | 86.51 |
| CDX76076 | Canola | cytosol, nucleus, plastid | 79.68 | 86.39 |
| Solyc03g078650.2.1 | Tomato | cytosol, nucleus, plastid | 54.57 | 56.9 |
| PGSC0003DMT400059652 | Potato | cytosol | 54.34 | 56.8 |
| VIT_13s0019g03180.t01 | Wine grape | cytosol | 54.79 | 56.34 |
| KRH73113 | Soybean | cytosol | 52.74 | 54.48 |
| AT5G05840.1 | Thale cress | cytosol | 54.34 | 54.21 |
| KRH15018 | Soybean | cytosol | 52.51 | 53.86 |
| KRG97798 | Soybean | cytosol | 53.42 | 53.3 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 46.12 | 53.3 |
| KRH31070 | Soybean | cytosol | 52.51 | 52.75 |
| Solyc05g052860.2.1 | Tomato | cytosol | 51.83 | 51.24 |
| PGSC0003DMT400069765 | Potato | cytosol | 51.83 | 51.13 |
| GSMUA_Achr5P28960_001 | Banana | cytosol | 48.86 | 49.08 |
| GSMUA_Achr6P33890_001 | Banana | cytosol | 42.47 | 48.56 |
| AT5G66740.1 | Thale cress | cytosol | 40.64 | 48.11 |
| PGSC0003DMT400069768 | Potato | cytosol | 21.92 | 47.76 |
| TraesCS4B01G211300.1 | Wheat | cytosol, nucleus, plastid | 47.03 | 46.19 |
| AT1G75160.1 | Thale cress | cytosol | 41.32 | 45.82 |
| TraesCS4A01G093200.1 | Wheat | cytosol, nucleus, plastid | 46.58 | 45.64 |
| TraesCS4D01G211900.1 | Wheat | cytosol, nucleus, plastid | 46.58 | 45.33 |
| Os03t0267500-01 | Rice | plasma membrane | 45.43 | 45.12 |
| EER95119 | Sorghum | cytosol | 44.52 | 44.02 |
| Zm00001d028565_P002 | Maize | cytosol | 45.89 | 43.7 |
| Zm00001d047840_P001 | Maize | cytosol, peroxisome, plastid | 45.21 | 43.52 |
| HORVU4Hr1G060590.5 | Barley | mitochondrion | 46.35 | 40.6 |
| AT3G19540.1 | Thale cress | plastid | 38.81 | 35.05 |
| AT1G27690.1 | Thale cress | plastid | 34.47 | 34.87 |
| AT1G49840.1 | Thale cress | plastid | 38.81 | 34.41 |
| AT5G06610.1 | Thale cress | cytosol | 27.63 | 32.88 |
| AT1G79420.1 | Thale cress | mitochondrion | 30.37 | 31.89 |
Protein Annotations
| MapMan:27.4.5.3 | EntrezGene:824738 | UniProt:A0A178VAJ7 | ProteinID:AEE79426.1 | ArrayExpress:AT3G55720 | EnsemblPlantsGene:AT3G55720 |
| RefSeq:AT3G55720 | TAIR:AT3G55720 | RefSeq:AT3G55720-TAIR-G | EnsemblPlants:AT3G55720.1 | TAIR:AT3G55720.1 | Unigene:At.34996 |
| ProteinID:CAB81597.1 | InterPro:DUF620 | GO:GO:0008150 | GO:GO:0009628 | GO:GO:0080167 | RefSeq:NP_191131.1 |
| ProteinID:OAP02926.1 | PFAM:PF04788 | PANTHER:PTHR31300 | PANTHER:PTHR31300:SF2 | UniProt:Q9M050 | UniParc:UPI00000A6D78 |
| SEG:seg | : | : | : | : | : |
Description
Replication factor C subunit, putative (DUF620) [Source:UniProtKB/TrEMBL;Acc:Q9M050]
Coordinates
chr3:+:20679664..20681447
Molecular Weight (calculated)
48121.4 Da
IEP (calculated)
5.388
GRAVY (calculated)
-0.334
Length
438 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTLCPNFDR EDGLETVLEV PMPEELFCSD NNKSGAWRSV KSSLLRSPPD NSSSLATLFG GRDSQIQMLL GIVGAPSIPL PISSDQAKID HPISNLIKNQ
101: SIESAMAKYI VKQYTAAAGG EMALDAVESM YAMGKVKMGV TEFCAAKTLN GKRKKKMVRI RNVNNNNGNG GEMGGFVLWK KGSSQWSLEL VVSGCKVSAG
201: CDGNVDWRQS PWLAHSHASN EPSGPLRRFL QGLDPKTTAN LFAGSVCVGE KAVNNEECFV LKLETQPSGL KSRSKSGMET VKHTVWGCFG QRTGLLVQLE
301: DTYLVRIKTG LEDEDMVLWE TTSETLIQDY KSIDGIQIAH RGKTRVSLLR LDESLESHSK TTMEESWEIE EVGFNVKGLS SDFFLPPGDL CIKEEEETGF
401: SFGDYTSPML LPLKVSTTSW KIKSSKVTAI EDFGEFEG
101: SIESAMAKYI VKQYTAAAGG EMALDAVESM YAMGKVKMGV TEFCAAKTLN GKRKKKMVRI RNVNNNNGNG GEMGGFVLWK KGSSQWSLEL VVSGCKVSAG
201: CDGNVDWRQS PWLAHSHASN EPSGPLRRFL QGLDPKTTAN LFAGSVCVGE KAVNNEECFV LKLETQPSGL KSRSKSGMET VKHTVWGCFG QRTGLLVQLE
301: DTYLVRIKTG LEDEDMVLWE TTSETLIQDY KSIDGIQIAH RGKTRVSLLR LDESLESHSK TTMEESWEIE EVGFNVKGLS SDFFLPPGDL CIKEEEETGF
401: SFGDYTSPML LPLKVSTTSW KIKSSKVTAI EDFGEFEG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.