Factsheet for AT1G49840.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32838	Canola	plastid	76.72	83.3
CDY16530	Canola	plastid	75.91	82.96
Bra014219.1-P	Field mustard	plastid	80.57	81.56
AT3G19540.1	Thale cress	plastid	79.15	80.62
PGSC0003DMT400066530	Potato	plastid	68.62	72.13
KRH35700	Soybean	plastid	67.21	71.86
KRG91072	Soybean	plastid	67.21	71.71
Solyc01g107350.2.1	Tomato	plastid	68.22	71.7
VIT_03s0091g00410.t01	Wine grape	plastid	68.83	71.58
GSMUA_Achr4P32590_001	Banana	cytosol	61.54	67.26
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	61.94	66.81
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	41.5	66.78
Os12t0581300-01	Rice	cytosol	20.85	65.19
GSMUA_Achr6P16820_001	Banana	cytosol	57.89	64.85
GSMUA_Achr10P...	Banana	cytosol	50.4	64.01
OQU79433	Sorghum	cytosol	57.89	63.7
GSMUA_Achr10P...	Banana	plastid	53.85	63.48
GSMUA_Achr6P24020_001	Banana	cytosol	51.01	62.84
TraesCS5B01G078600.2	Wheat	cytosol	54.66	62.79
GSMUA_Achr2P21540_001	Banana	plastid	55.47	62.7
HORVU5Hr1G018870.3	Barley	cytosol, mitochondrion	57.69	61.96
TraesCS4D01G076200.1	Wheat	cytosol, mitochondrion	57.29	61.93
Os03t0606100-01	Rice	cytosol	55.06	61.82
TraesCS5D01G085100.1	Wheat	cytosol	57.89	61.77
TraesCS4A01G237300.1	Wheat	cytosol, mitochondrion	57.09	61.71
TraesCS4B01G077800.1	Wheat	cytosol	57.09	61.71
GSMUA_Achr7P00620_001	Banana	mitochondrion	50.81	61.67
TraesCS5A01G072300.1	Wheat	cytosol	57.49	61.34
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	59.11	60.83
EER91248	Sorghum	cytosol	56.28	59.53
GSMUA_Achr2P13470_001	Banana	cytosol	52.83	59.45
Zm00001d013746_P001	Maize	cytosol	54.86	58.53
AT1G27690.1	Thale cress	plastid	51.21	58.43
TraesCS2D01G192800.1	Wheat	nucleus	59.51	58.1
TraesCS2B01G211900.1	Wheat	nucleus	59.51	57.76
Zm00001d030837_P001	Maize	cytosol, mitochondrion	55.87	57.74
TraesCS2A01G194900.1	Wheat	nucleus	59.31	57.68
Os07t0591100-01	Rice	nucleus	59.92	57.14
OQU92347	Sorghum	mitochondrion, plastid	56.07	56.88
Zm00001d047324_P001	Maize	cytosol	56.07	56.53
EER99634	Sorghum	nucleus	59.72	56.51
Zm00001d016585_P002	Maize	extracellular, plasma membrane	27.94	54.55
Zm00001d006749_P001	Maize	cytosol	57.69	54.18
Zm00001d022006_P001	Maize	cytosol, plastid	59.31	52.6
HORVU4Hr1G013190.8	Barley	mitochondrion	53.64	52.48
AT1G79420.1	Thale cress	mitochondrion	37.85	44.84
AT5G06610.1	Thale cress	cytosol	32.39	43.48
AT5G66740.1	Thale cress	cytosol	32.19	42.97
AT5G05840.1	Thale cress	cytosol	35.83	40.32
AT3G55720.1	Thale cress	nucleus	34.41	38.81
AT1G75160.1	Thale cress	cytosol	30.16	37.72

Protein Annotations

MapMan:27.4.5.3	EntrezGene:841407	UniProt:A0A178WMU0	ProteinID:AAG51777.1	ProteinID:AEE32482.1	EMBL:AK228530
ArrayExpress:AT1G49840	EnsemblPlantsGene:AT1G49840	RefSeq:AT1G49840	TAIR:AT1G49840	RefSeq:AT1G49840-TAIR-G	EnsemblPlants:AT1G49840.1
TAIR:AT1G49840.1	EMBL:AY065417	EMBL:AY091246	InterPro:DUF620	GO:GO:0003674	GO:GO:0003824
GO:GO:0016740	RefSeq:NP_175406.1	ProteinID:OAP18875.1	PFAM:PF04788	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PANTHER:PTHR31300
PANTHER:PTHR31300:SF1	UniProt:Q9C6D0	UniParc:UPI00000A6CEC	SEG:seg	:	:

Description

Glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620) [Source:UniProtKB/TrEMBL;Acc:Q9C6D0]

Coordinates

chr1:+:18451746..18454463

Molecular Weight (calculated)

53978.2 Da

IEP (calculated)

9.429

GRAVY (calculated)

-0.416

Length

494 amino acids

Sequence
(BLAST)

001: MEKKQGFFSS LRDEVVRGLS PSRSRPRSRS ASPSRSTTPH MKALLWGRKK LIASSGCSGG GGVIGGERGG YYLSQPEPFI GRSSSLRPVM EGPDPDNGEV
101: SGVDSKRLGS GLSHWVKGQW SRAPSVTSTT PAYRKSDLRL LLGVMGAPLA PINVSSSSHL LHLTIRDSPT ETSSAQYILQ QYTAACGGHK LHNAIKNAYA
201: MGKLKMITSE LETPTGTVRN RNSTKSETGG FVLWQMNPDM WYVELSVGGS KVRAGCNGKL VWRHTPWLGS HTAKGPVRPL RRALQGLDPR TTATMFAESK
301: CVGERKVNGE DCFILKLCTD PETLRARSEG PAEIVRHILF GYFSQRTGLL AQIEDSQLTR IQSNDGDAVY WETTINSSLD DYKQVEGIMI AHSGRSVVTL
401: FRFGEVAMSH TRTKMEERWT IEEVAFNVPG LSLDCFIPPA DLRSGSLTEA CEYSGQEEKG KSSLALASTT AHRAKVAALE KGSFDNDPVW HIDV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.