Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G194900.1 | Wheat | nucleus | 99.41 | 99.02 |
| TraesCS2B01G211900.1 | Wheat | nucleus | 98.22 | 97.64 |
| EER99634 | Sorghum | nucleus | 89.92 | 87.16 |
| Os07t0591100-01 | Rice | nucleus | 87.35 | 85.33 |
| Zm00001d006749_P001 | Maize | cytosol | 86.17 | 82.89 |
| Zm00001d022006_P001 | Maize | cytosol, plastid | 89.13 | 80.97 |
| VIT_03s0091g00410.t01 | Wine grape | plastid | 68.97 | 73.47 |
| KRG91072 | Soybean | plastid | 65.02 | 71.06 |
| PGSC0003DMT400066530 | Potato | plastid | 65.81 | 70.85 |
| KRH35700 | Soybean | plastid | 64.62 | 70.78 |
| Solyc01g107350.2.1 | Tomato | plastid | 65.61 | 70.64 |
| TraesCS4D01G076200.1 | Wheat | cytosol, mitochondrion | 62.85 | 69.58 |
| KRH15430 | Soybean | plastid | 64.62 | 69.13 |
| KRH05611 | Soybean | plastid | 64.62 | 68.7 |
| VIT_18s0001g09450.t01 | Wine grape | plastid | 63.04 | 68.02 |
| TraesCS5D01G085100.1 | Wheat | cytosol | 62.06 | 67.82 |
| PGSC0003DMT400055468 | Potato | plastid | 62.85 | 67.66 |
| CDX95439 | Canola | mitochondrion | 57.71 | 67.13 |
| CDY50147 | Canola | mitochondrion | 58.1 | 66.97 |
| Zm00001d016585_P002 | Maize | extracellular, plasma membrane | 33.0 | 66.01 |
| Bra038214.1-P | Field mustard | mitochondrion, plastid | 59.09 | 65.14 |
| AT3G19540.1 | Thale cress | plastid | 62.25 | 64.95 |
| CDY16530 | Canola | plastid | 57.71 | 64.6 |
| CDY67693 | Canola | mitochondrion | 57.71 | 64.32 |
| CDY46168 | Canola | mitochondrion | 57.91 | 64.25 |
| Bra022430.1-P | Field mustard | mitochondrion, plastid | 59.29 | 63.97 |
| CDY32838 | Canola | plastid | 57.11 | 63.52 |
| Bra014219.1-P | Field mustard | plastid | 59.29 | 61.48 |
| Solyc04g078190.2.1 | Tomato | nucleus, plastid | 35.57 | 61.43 |
| AT1G49840.1 | Thale cress | plastid | 58.1 | 59.51 |
| AT1G27690.1 | Thale cress | plastid | 50.2 | 58.66 |
| CDY03939 | Canola | cytosol | 12.65 | 54.24 |
| CDX90103 | Canola | mitochondrion, plastid | 49.41 | 49.31 |
| CDY67976 | Canola | mitochondrion, plastid | 49.41 | 49.31 |
| Bra010924.1-P | Field mustard | mitochondrion, plastid | 51.38 | 48.69 |
| TraesCS4D01G281900.1 | Wheat | cytosol | 34.39 | 47.67 |
| TraesCS4D01G211900.1 | Wheat | cytosol, nucleus, plastid | 37.94 | 42.67 |
| TraesCS3D01G299300.1 | Wheat | cytosol | 30.83 | 40.62 |
| TraesCS1D01G131900.1 | Wheat | cytosol | 33.99 | 37.8 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G192800.1 | EnsemblPlantsGene:TraesCS2D01G192800 | InterPro:DUF620 | PANTHER:PTHR31300 | PANTHER:PTHR31300:SF5 | PFAM:PF04788 |
| SEG:seg | MapMan:27.4.5.3 | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:136831655..136833625
Molecular Weight (calculated)
54579.6 Da
IEP (calculated)
9.748
GRAVY (calculated)
-0.273
Length
506 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKERKQGFF AALKEEVVRG LSPARSRGKT PARSASPARM LIPRRRKAPP PPPEKQMEQQ QYLPEQLIAR SGSLRPGGEV LEPLIEGPDA DRLAAGDFVG
101: EDSGRREGFG HWVRGHLTRT PSMASASAGP GGSSGSFRHS DLRLLLGVMG APLAPISSNL ADPLPLLSIK GTPIESSSAQ YILQQYMAAS GGYKMLQSVR
201: NAYAMGKVRM VASEFETATR VVKNRGPSGR GAAAVEQGGF VLWTMAPGMW YVELAVGGSK VHAGCNGRLV WRHTPWLGAH AAKGPVRPLR RVLQGLDPLT
301: TAGLFAEARC VGEKKVNGEE CFILKLSADP QTLKLRSEGP AEIIRHVLFG YFSQRTGLMV HIEDSHLTRI QPHSGGDAVY WETTISSCLE DYRAVEGIMI
401: AHAGRSAVTL FRFGEAAMSH TKTRMEEAWS IEEVAFNVPG LSVDCFIPPA DIRSGSVGEA CELPPQHGDR AKSTAVHPAR VAAAAERAHT HGAGGRGEKI
501: VWRVEV
101: EDSGRREGFG HWVRGHLTRT PSMASASAGP GGSSGSFRHS DLRLLLGVMG APLAPISSNL ADPLPLLSIK GTPIESSSAQ YILQQYMAAS GGYKMLQSVR
201: NAYAMGKVRM VASEFETATR VVKNRGPSGR GAAAVEQGGF VLWTMAPGMW YVELAVGGSK VHAGCNGRLV WRHTPWLGAH AAKGPVRPLR RVLQGLDPLT
301: TAGLFAEARC VGEKKVNGEE CFILKLSADP QTLKLRSEGP AEIIRHVLFG YFSQRTGLMV HIEDSHLTRI QPHSGGDAVY WETTISSCLE DYRAVEGIMI
401: AHAGRSAVTL FRFGEAAMSH TKTRMEEAWS IEEVAFNVPG LSVDCFIPPA DIRSGSVGEA CELPPQHGDR AKSTAVHPAR VAAAAERAHT HGAGGRGEKI
501: VWRVEV
001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV
Arabidopsis Description
AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.