Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P16820_001 | Banana | cytosol | 75.56 | 68.71 |
| GSMUA_Achr10P... | Banana | cytosol | 64.59 | 66.58 |
| GSMUA_Achr4P14230_001 | Banana | cytosol, mitochondrion, nucleus, peroxisome | 75.56 | 66.16 |
| GSMUA_Achr4P32590_001 | Banana | cytosol | 71.82 | 63.72 |
| GSMUA_Achr3P02230_001 | Banana | cytosol, plastid | 48.63 | 63.52 |
| KRG91072 | Soybean | plastid | 69.58 | 60.26 |
| KRH35700 | Soybean | plastid | 69.33 | 60.17 |
| VIT_03s0091g00410.t01 | Wine grape | plastid | 70.32 | 59.37 |
| GSMUA_Achr7P26350_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 70.57 | 58.96 |
| GSMUA_Achr10P... | Banana | plastid | 61.6 | 58.95 |
| PGSC0003DMT400066530 | Potato | plastid | 69.08 | 58.94 |
| VIT_18s0001g09450.t01 | Wine grape | plastid | 68.58 | 58.64 |
| KRH05611 | Soybean | plastid | 69.58 | 58.61 |
| KRH15430 | Soybean | plastid | 69.08 | 58.56 |
| Solyc01g107350.2.1 | Tomato | plastid | 68.58 | 58.51 |
| PGSC0003DMT400055468 | Potato | plastid | 68.08 | 58.09 |
| CDY50147 | Canola | mitochondrion | 63.09 | 57.63 |
| GSMUA_Achr7P00620_001 | Banana | mitochondrion | 58.1 | 57.25 |
| CDX95439 | Canola | mitochondrion | 62.09 | 57.24 |
| GSMUA_Achr2P21540_001 | Banana | plastid | 62.34 | 57.21 |
| GSMUA_Achr2P13470_001 | Banana | cytosol | 61.85 | 56.49 |
| Bra038214.1-P | Field mustard | mitochondrion, plastid | 63.09 | 55.12 |
| CDY67693 | Canola | mitochondrion | 61.85 | 54.63 |
| CDY46168 | Canola | mitochondrion | 62.09 | 54.61 |
| CDY16530 | Canola | plastid | 61.35 | 54.42 |
| Bra022430.1-P | Field mustard | mitochondrion, plastid | 63.34 | 54.16 |
| AT3G19540.1 | Thale cress | plastid | 65.34 | 54.02 |
| CDY32838 | Canola | plastid | 60.85 | 53.63 |
| AT1G27690.1 | Thale cress | plastid | 56.86 | 52.66 |
| Solyc04g078190.2.1 | Tomato | nucleus, plastid | 38.15 | 52.22 |
| CDY03939 | Canola | cytosol | 15.21 | 51.69 |
| AT1G49840.1 | Thale cress | plastid | 62.84 | 51.01 |
| Bra014219.1-P | Field mustard | plastid | 61.6 | 50.61 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 35.91 | 44.04 |
| GSMUA_Achr3P29550_001 | Banana | cytosol | 38.9 | 43.82 |
| Bra010924.1-P | Field mustard | mitochondrion, plastid | 57.61 | 43.26 |
| CDY67976 | Canola | mitochondrion, plastid | 54.61 | 43.2 |
| CDX90103 | Canola | mitochondrion, plastid | 54.61 | 43.2 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 40.65 | 43.01 |
| GSMUA_Achr9P25120_001 | Banana | mitochondrion | 35.41 | 42.14 |
| GSMUA_Achr2P13560_001 | Banana | cytosol | 38.65 | 41.11 |
| GSMUA_Achr4P27870_001 | Banana | cytosol | 38.65 | 40.79 |
| GSMUA_Achr5P28960_001 | Banana | cytosol | 41.9 | 38.53 |
| GSMUA_Achr6P33890_001 | Banana | cytosol | 34.41 | 36.03 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P24020_001 | EnsemblPlants:GSMUA_Achr6T24020_001 | EnsemblPlantsGene:GSMUA_Achr6G24020_001 | InterPro:DUF620 | PANTHER:PTHR31300 | PANTHER:PTHR31300:SF1 |
| PFAM:PF04788 | SEG:seg | UniParc:UPI00029679E0 | UniProt:M0T9Q0 | MapMan:27.4.5.3 | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G24020_001]
Coordinates
chr6:+:24393119..24394924
Molecular Weight (calculated)
43415.9 Da
IEP (calculated)
9.205
GRAVY (calculated)
-0.245
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKQGFLPA LREEEVATGP SPTRSREKGS APEAVAPVAW KEGWGRWIRG QLSRAPSAAT SSVAAGASSS ALRSDLRLLL GVLGAPLAPV HVSSFDPLPH
101: LSVKDTPIET SSAQYIMQQY TAASGGLRLH RSIRNAYATG KVRMVASEFE ATAKVVRTGC VSSSTTESGG FVLWQMAPDM WYVELAVGGS KVHAGSNGKV
201: VWRHTPWLGS HAAKGPARPL RRALQGLDPL TTASMFADAR CIGEKTVNGE DCFVLKLSAD PPTLRARSEG PAEIIRHVLI QANAGGDAVY WETTMNSSLD
301: DYRLVDGIMI AHSGRSTATL FRFGEKAMNH TKRRMEEAWT IDEVAFNVPG LSMDCFIPPA DMRRGSTSEA CELPRGVRGK FSSRYPQDMP EKIVCRFEVL
401: G
101: LSVKDTPIET SSAQYIMQQY TAASGGLRLH RSIRNAYATG KVRMVASEFE ATAKVVRTGC VSSSTTESGG FVLWQMAPDM WYVELAVGGS KVHAGSNGKV
201: VWRHTPWLGS HAAKGPARPL RRALQGLDPL TTASMFADAR CIGEKTVNGE DCFVLKLSAD PPTLRARSEG PAEIIRHVLI QANAGGDAVY WETTMNSSLD
301: DYRLVDGIMI AHSGRSTATL FRFGEKAMNH TKRRMEEAWT IDEVAFNVPG LSMDCFIPPA DMRRGSTSEA CELPRGVRGK FSSRYPQDMP EKIVCRFEVL
401: G
001: MDKKHGLFSK SNSRRPRSKS PVRSVSPIII RRRKGRYVTQ PDRHMSEMLA PVIEGPDPDA EDSGSSGDYS RFERRWYNWM KCQLPVAPPS VSSSSDFKRT
101: DLRLLLGVLG APLGPVHVSA LDLLPHLSIK NTPMETSSAQ YILQQYTAAS GGQKLHSSVQ NGYVMGRIRT MASEFETGSK GSKSKNNSSK AVESGGFVLW
201: HMNPDMWYME LVLGGSKVLA GCDGKLVWRH TPWLGPHAAK GPVRPLRRAL QGLDPRTTAY MFANARCIGE KKIDGEDCFI LKLCADPATL KARSEGASET
301: IRHTLFGYFS QKTGLLVHLE DSQLTRIQNN GGEAVYWETT INSYLEDYKP VEGIMIAHSG RSVATLLRFG DMSSGHNTKT TMQEAWVIDE ISFNVPGLSI
401: DCFIPPSELR FDSHVEDLSQ GPKIRTLHGH KNG
101: DLRLLLGVLG APLGPVHVSA LDLLPHLSIK NTPMETSSAQ YILQQYTAAS GGQKLHSSVQ NGYVMGRIRT MASEFETGSK GSKSKNNSSK AVESGGFVLW
201: HMNPDMWYME LVLGGSKVLA GCDGKLVWRH TPWLGPHAAK GPVRPLRRAL QGLDPRTTAY MFANARCIGE KKIDGEDCFI LKLCADPATL KARSEGASET
301: IRHTLFGYFS QKTGLLVHLE DSQLTRIQNN GGEAVYWETT INSYLEDYKP VEGIMIAHSG RSVATLLRFG DMSSGHNTKT TMQEAWVIDE ISFNVPGLSI
401: DCFIPPSELR FDSHVEDLSQ GPKIRTLHGH KNG
Arabidopsis Description
Lipase, putative (DUF620) [Source:UniProtKB/TrEMBL;Acc:Q8RWY0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.