Factsheet for GSMUA_Achr10P09110_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P36120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79420.1	GSMUA_Achr6P36120_001	AT5G62880.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P25120_001	Banana	mitochondrion	74.92	72.7
VIT_19s0085g00900.t01	Wine grape	mitochondrion	61.77	52.06
KRH43665	Soybean	mitochondrion, peroxisome, plasma membrane, plastid	61.16	51.95
KRH13789	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	60.86	51.82
CDX79318	Canola	cytosol	13.15	50.0
CDX87382	Canola	mitochondrion	59.63	46.76
CDX88540	Canola	mitochondrion	59.63	46.76
Bra035117.1-P	Field mustard	mitochondrion	59.33	46.52
AT1G79420.1	Thale cress	mitochondrion	59.33	46.52
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	40.37	43.0
GSMUA_Achr7P00620_001	Banana	mitochondrion	49.24	39.56
GSMUA_Achr10P...	Banana	cytosol	46.79	39.33
GSMUA_Achr3P29550_001	Banana	cytosol	42.2	38.76
GSMUA_Achr10P...	Banana	plastid	48.93	38.19
GSMUA_Achr4P32590_001	Banana	cytosol	50.15	36.28
GSMUA_Achr6P24020_001	Banana	cytosol	44.04	35.91
GSMUA_Achr2P13470_001	Banana	cytosol	48.01	35.76
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	49.24	35.15
GSMUA_Achr2P21540_001	Banana	plastid	46.79	35.01
GSMUA_Achr6P16820_001	Banana	cytosol	46.79	34.69
GSMUA_Achr2P13560_001	Banana	cytosol	39.76	34.48
GSMUA_Achr4P27870_001	Banana	cytosol	39.76	34.21
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	38.53	33.25
GSMUA_Achr6P33890_001	Banana	cytosol	38.53	32.9
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	46.79	31.88
GSMUA_Achr5P28960_001	Banana	cytosol	39.76	29.82

Protein Annotations

EnsemblPlants:GSMUA_Achr10P09110_001	EnsemblPlants:GSMUA_Achr10T09110_001	EnsemblPlantsGene:GSMUA_Achr10G09110_001	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF8
PFAM:PF04788	UniParc:UPI00029515C0	UniProt:M0RGN7	MapMan:27.4.5.3	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G09110_001]

Coordinates

chr10:+:19100355..19101666

Molecular Weight (calculated)

36079.8 Da

IEP (calculated)

9.302

GRAVY (calculated)

-0.216

Length

327 amino acids

Sequence
(BLAST)

001: MGPRSRGRNH VCSVQPLGPL MEGPDPEAHG EGAKKERYWE VIRTWLRLHM DKAMSGAHSS TPFHARSASK RTDLRLILGV LGCPLAPIPV TIDAPTHIFC
101: IKDSPMETCS ARYIIQQYLA ATGCLKQCMK SMYAAGTVKM VCHEPPRTGG ERGCFVLWQK SPGMWSVELV VAGHKVVSGS NGKVVWRSVP WLGTHAARGP
201: QRPLRRLVQG LDPKSTARMF AEARSGLLTY IEDSHLARVE APGSDAMYWE TTIGSVIEDY REVDGVLVAH QGRSAATVLR FGDASARRSR IRMEEAWRIE
301: DVVFDVAGLS VDCFIPPKEI MAGFRGK

Best Arabidopsis Sequence Match ( AT1G79420.1 )
(BLAST)

001: MSNSKSYWRK QRWGTPPQAL TPLMEGPDPD MQDERTKKES SWEAIREWFK VHKGISGNMS SPSVQPLCNS YDVPAKGQDL RLLLGVLGCP LAPISVVVSD
101: LFPDDPLLGS FQIKNVPFET STAHYIIQQY LAATGCLKRA KAAKNMYATG IMKMSCCETE IAAGKSVKTL GGGGNGRSGD SGCFVLWQMQ PGMWSLELVL
201: GGTKLISGSD GKTVWRHTPW LGTHAAKGPQ RPLRRLIQGL DPKTTASLFA KAQCLGERRI GDDDCFVLKV SADRDSLLER NDAGAPAEVI RHALYGYFCQ
301: KSGLLVYLED SHLTRVMTIS PEDEAVYWET TIGTSIGDYR DVDGVAVAHC GRAVATVFRF GETSLQYSRT RMEEIWRIDD VVFDVPGLSL DSFIPPADIF
401: EDTNPNNNNI YSIVNSR

Arabidopsis Description

At1g79420/T8K14_16 [Source:UniProtKB/TrEMBL;Acc:Q940T0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.