CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
vacuole 1
plasma membrane 1
plastid 1
mitochondrion 2
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03338
KRH54429
KRH54430
KRH57035
KRH63489

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79420.1	KRH03338	AT5G62880.1	21798944
AT1G79420.1	KRH54429	AT5G62880.1	21798944
AT1G79420.1	KRH54430	AT5G62880.1	21798944
AT1G79420.1	KRH57035	AT5G62880.1	21798944
AT1G79420.1	KRH63489	AT5G62880.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43665	Soybean	mitochondrion, peroxisome, plasma membrane, plastid	98.18	97.92
VIT_19s0085g00900.t01	Wine grape	mitochondrion	80.47	79.64
CDX79318	Canola	cytosol	14.84	66.28
AT1G79420.1	Thale cress	mitochondrion	71.88	66.19
CDX87382	Canola	mitochondrion	71.61	65.95
CDX88540	Canola	mitochondrion	71.61	65.95
Bra035117.1-P	Field mustard	mitochondrion	71.35	65.71
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	51.82	60.86
GSMUA_Achr9P25120_001	Banana	mitochondrion	51.3	58.46
KRH71794	Soybean	cytosol	44.53	47.24
KRG96347	Soybean	cytosol	42.97	46.74
KRH68081	Soybean	cytosol	43.23	46.5
KRH38019	Soybean	peroxisome	42.97	45.71
KRH35700	Soybean	plastid	51.56	42.86
KRG91072	Soybean	plastid	51.56	42.76
KRH15430	Soybean	plastid	50.0	40.59
KRH05611	Soybean	plastid	50.0	40.34
KRH51867	Soybean	cytosol	36.46	36.65
KRH50361	Soybean	cytosol	36.2	36.39
KRH76791	Soybean	cytosol	34.38	35.29
KRH31070	Soybean	cytosol	39.84	35.09
KRH05801	Soybean	cytosol	35.16	35.06
KRH28651	Soybean	cytosol	34.38	34.92
KRG97798	Soybean	cytosol	39.84	34.85
KRH73113	Soybean	cytosol	38.28	34.67
KRH15018	Soybean	cytosol	38.54	34.66

Protein Annotations

EMBL:ACUP02009787	EnsemblPlants:KRH13789	EnsemblPlantsGene:GLYMA_15G263800	EntrezGene:100810457	InterPro:DUF620	PANTHER:PTHR31300
PANTHER:PTHR31300:SF8	PFAM:PF04788	ProteinID:KRH13789	ProteinID:KRH13789.1	SEG:seg	UniParc:UPI00023D7CF9
UniProt:I1MJE4	MapMan:27.4.5.3	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:49753881..49757181

Molecular Weight (calculated)

42756.2 Da

IEP (calculated)

7.282

GRAVY (calculated)

-0.283

Length

384 amino acids

Sequence
(BLAST)

001: MGSKARWRQS WAPQPLTPLM EGPGPEMQEE GTKKESSWEV IREWFRTQKI SPGGSFSQSS SFYGTIHAKT QDLRLLLGVL GCPLAPIPSA HDPTLSIHIK
101: DTPFETSTAK YIIQQYLAAT GCLKQQKDTK NMYATGMVKM ICCETEISSG KNVKCLGTRS SDNGCFVLWQ MLPGMWSLEL VVGDHKVVAG SNGKTVWRHT
201: PWLGTHAAKG PQRPLRRIIQ GLDPKTTASL FTNAQCLGEN RIGTVDCFVL KVSADRAAVV ERSEGPAEVI RHILYGYFCQ KSGLLIYLED SHLTRVPTQD
301: NDTVYWETTI GSSIGDYRDV DGVLIAHQGR SIATVFRFGE LSMQHSRTRM EEIWTIDDVM FNVPGLSMDH FIPPADIFDN INSP

Best Arabidopsis Sequence Match ( AT1G79420.1 )
(BLAST)

001: MSNSKSYWRK QRWGTPPQAL TPLMEGPDPD MQDERTKKES SWEAIREWFK VHKGISGNMS SPSVQPLCNS YDVPAKGQDL RLLLGVLGCP LAPISVVVSD
101: LFPDDPLLGS FQIKNVPFET STAHYIIQQY LAATGCLKRA KAAKNMYATG IMKMSCCETE IAAGKSVKTL GGGGNGRSGD SGCFVLWQMQ PGMWSLELVL
201: GGTKLISGSD GKTVWRHTPW LGTHAAKGPQ RPLRRLIQGL DPKTTASLFA KAQCLGERRI GDDDCFVLKV SADRDSLLER NDAGAPAEVI RHALYGYFCQ
301: KSGLLVYLED SHLTRVMTIS PEDEAVYWET TIGTSIGDYR DVDGVAVAHC GRAVATVFRF GETSLQYSRT RMEEIWRIDD VVFDVPGLSL DSFIPPADIF
401: EDTNPNNNNI YSIVNSR

Arabidopsis Description

At1g79420/T8K14_16 [Source:UniProtKB/TrEMBL;Acc:Q940T0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.