Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79420.1 | CDY00332 | AT5G62880.1 | 21798944 |
| AT1G79420.1 | CDY30738 | AT5G62880.1 | 21798944 |
| AT1G79420.1 | CDY45748 | AT5G62880.1 | 21798944 |
| AT1G79420.1 | CDY56740 | AT5G62880.1 | 21798944 |
| AT1G79420.1 | CDY68200 | AT5G62880.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035117.1-P | Field mustard | mitochondrion | 91.86 | 18.94 |
| AT1G79420.1 | Thale cress | mitochondrion | 91.86 | 18.94 |
| CDX88540 | Canola | mitochondrion | 91.86 | 18.94 |
| CDX87382 | Canola | mitochondrion | 91.86 | 18.94 |
| KRH13789 | Soybean | cytosol, mitochondrion, peroxisome, plasma membrane | 66.28 | 14.84 |
| KRH43665 | Soybean | mitochondrion, peroxisome, plasma membrane, plastid | 66.28 | 14.81 |
| VIT_19s0085g00900.t01 | Wine grape | mitochondrion | 65.12 | 14.43 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 50.0 | 13.15 |
| GSMUA_Achr9P25120_001 | Banana | mitochondrion | 48.84 | 12.46 |
| CDY68684 | Canola | cytosol, mitochondrion | 32.56 | 9.79 |
| CDY67693 | Canola | mitochondrion | 46.51 | 8.81 |
| CDY46168 | Canola | mitochondrion | 46.51 | 8.77 |
| CDX95439 | Canola | mitochondrion | 44.19 | 8.74 |
| CDY50147 | Canola | mitochondrion | 44.19 | 8.66 |
| CDY55767 | Canola | cytosol | 36.05 | 8.42 |
| CDX81011 | Canola | cytosol | 36.05 | 8.42 |
| CDY53851 | Canola | cytosol | 34.88 | 8.13 |
| CDY30758 | Canola | cytosol | 34.88 | 8.13 |
| CDY16530 | Canola | plastid | 41.86 | 7.96 |
| CDY32838 | Canola | plastid | 41.86 | 7.91 |
| CDY67976 | Canola | mitochondrion, plastid | 46.51 | 7.89 |
| CDX90103 | Canola | mitochondrion, plastid | 46.51 | 7.89 |
| CDX70123 | Canola | cytosol | 39.53 | 7.67 |
| CDX98870 | Canola | cytosol | 39.53 | 7.66 |
| CDY49838 | Canola | cytosol | 32.56 | 7.59 |
| CDY52160 | Canola | cytosol | 32.56 | 7.59 |
| CDX68146 | Canola | cytosol | 32.56 | 7.41 |
| CDY46011 | Canola | cytosol | 32.56 | 7.07 |
| CDY37259 | Canola | cytosol | 32.56 | 7.07 |
| CDY27272 | Canola | cytosol, nucleus, plastid | 31.4 | 6.22 |
| CDX76076 | Canola | cytosol, nucleus, plastid | 19.77 | 4.21 |
| CDY02955 | Canola | cytosol, nucleus, plastid | 19.77 | 4.21 |
| CDY03939 | Canola | cytosol | 4.65 | 3.39 |
Protein Annotations
| EnsemblPlants:CDX79318 | EnsemblPlantsGene:GSBRNA2T00131990001 | InterPro:DUF620 | PANTHER:PTHR31300 | PANTHER:PTHR31300:SF8 | PFAM:PF04788 |
| ProteinID:CDX79318 | ProteinID:CDX79318.1 | UniParc:UPI0004EB841F | MapMan:35.2 | : | : |
Description
BnaC06g19850D
Coordinates
chrLK031817:+:1290507..1290816
Molecular Weight (calculated)
9206.1 Da
IEP (calculated)
10.390
GRAVY (calculated)
-0.310
Length
86 amino acids
Sequence
(BLAST)
(BLAST)
1: MYATGIMKMS CCETEIAAGK SVKTLSGGGN GRSGDSELAL GGTKLISGSD GKTVWRHTPW LSTHAAKGPQ RPLRRLIQAT MYQFTF
001: MSNSKSYWRK QRWGTPPQAL TPLMEGPDPD MQDERTKKES SWEAIREWFK VHKGISGNMS SPSVQPLCNS YDVPAKGQDL RLLLGVLGCP LAPISVVVSD
101: LFPDDPLLGS FQIKNVPFET STAHYIIQQY LAATGCLKRA KAAKNMYATG IMKMSCCETE IAAGKSVKTL GGGGNGRSGD SGCFVLWQMQ PGMWSLELVL
201: GGTKLISGSD GKTVWRHTPW LGTHAAKGPQ RPLRRLIQGL DPKTTASLFA KAQCLGERRI GDDDCFVLKV SADRDSLLER NDAGAPAEVI RHALYGYFCQ
301: KSGLLVYLED SHLTRVMTIS PEDEAVYWET TIGTSIGDYR DVDGVAVAHC GRAVATVFRF GETSLQYSRT RMEEIWRIDD VVFDVPGLSL DSFIPPADIF
401: EDTNPNNNNI YSIVNSR
101: LFPDDPLLGS FQIKNVPFET STAHYIIQQY LAATGCLKRA KAAKNMYATG IMKMSCCETE IAAGKSVKTL GGGGNGRSGD SGCFVLWQMQ PGMWSLELVL
201: GGTKLISGSD GKTVWRHTPW LGTHAAKGPQ RPLRRLIQGL DPKTTASLFA KAQCLGERRI GDDDCFVLKV SADRDSLLER NDAGAPAEVI RHALYGYFCQ
301: KSGLLVYLED SHLTRVMTIS PEDEAVYWET TIGTSIGDYR DVDGVAVAHC GRAVATVFRF GETSLQYSRT RMEEIWRIDD VVFDVPGLSL DSFIPPADIF
401: EDTNPNNNNI YSIVNSR
Arabidopsis Description
At1g79420/T8K14_16 [Source:UniProtKB/TrEMBL;Acc:Q940T0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.