Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os12t0581300-01 | Rice | cytosol | 33.18 | 94.3 |
TraesCS5D01G085100.1 | Wheat | cytosol | 89.31 | 86.61 |
TraesCS5B01G078600.2 | Wheat | cytosol | 82.63 | 86.28 |
HORVU5Hr1G018870.3 | Barley | cytosol, mitochondrion | 87.97 | 85.87 |
TraesCS5A01G072300.1 | Wheat | cytosol | 88.42 | 85.75 |
Zm00001d030837_P001 | Maize | cytosol, mitochondrion | 87.31 | 82.01 |
EER91248 | Sorghum | cytosol | 76.84 | 73.88 |
VIT_03s0091g00410.t01 | Wine grape | plastid | 72.83 | 68.84 |
GSMUA_Achr7P00620_001 | Banana | mitochondrion | 61.92 | 68.3 |
KRG91072 | Soybean | plastid | 69.71 | 67.6 |
PGSC0003DMT400066530 | Potato | plastid | 70.6 | 67.45 |
KRH35700 | Soybean | plastid | 69.27 | 67.32 |
Solyc01g107350.2.1 | Tomato | plastid | 70.16 | 67.02 |
CDY50147 | Canola | mitochondrion | 64.81 | 66.29 |
CDX95439 | Canola | mitochondrion | 64.14 | 66.21 |
VIT_18s0001g09450.t01 | Wine grape | plastid | 68.6 | 65.67 |
CDY67693 | Canola | mitochondrion | 64.59 | 63.88 |
PGSC0003DMT400055468 | Potato | plastid | 66.82 | 63.83 |
KRH05611 | Soybean | plastid | 67.48 | 63.66 |
KRH15430 | Soybean | plastid | 67.04 | 63.64 |
CDY46168 | Canola | mitochondrion | 64.14 | 63.16 |
Bra038214.1-P | Field mustard | mitochondrion, plastid | 64.37 | 62.96 |
Bra022430.1-P | Field mustard | mitochondrion, plastid | 65.48 | 62.69 |
AT3G19540.1 | Thale cress | plastid | 67.26 | 62.27 |
CDY16530 | Canola | plastid | 61.47 | 61.06 |
OQU92347 | Sorghum | mitochondrion, plastid | 65.92 | 60.78 |
EER99634 | Sorghum | nucleus | 70.38 | 60.54 |
CDY32838 | Canola | plastid | 61.02 | 60.22 |
AT1G49840.1 | Thale cress | plastid | 63.7 | 57.89 |
AT1G27690.1 | Thale cress | plastid | 55.46 | 57.51 |
Bra014219.1-P | Field mustard | plastid | 62.36 | 57.38 |
CDY03939 | Canola | cytosol | 14.7 | 55.93 |
Solyc04g078190.2.1 | Tomato | nucleus, plastid | 34.97 | 53.58 |
CDY67976 | Canola | mitochondrion, plastid | 55.01 | 48.72 |
CDX90103 | Canola | mitochondrion, plastid | 54.79 | 48.52 |
Bra010924.1-P | Field mustard | mitochondrion, plastid | 56.57 | 47.57 |
EER95445 | Sorghum | cytosol | 36.75 | 44.96 |
EER95119 | Sorghum | cytosol | 41.65 | 42.21 |
OQU89854 | Sorghum | cytosol | 36.08 | 42.19 |
EES03659 | Sorghum | cytosol | 35.63 | 41.67 |
EES17962 | Sorghum | cytosol, nucleus, plastid | 37.64 | 35.58 |
Protein Annotations
EnsemblPlants:OQU79433 | EnsemblPlantsGene:SORBI_3008G143600 | InterPro:DUF620 | ncoils:Coil | PANTHER:PTHR31300 | PANTHER:PTHR31300:SF20 |
PFAM:PF04788 | ProteinID:OQU79433 | ProteinID:OQU79433.1 | SEG:seg | UniParc:UPI000B8BA6C3 | UniProt:A0A1Z5R6P2 |
MapMan:27.4.5.3 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:-:57488716..57491499
Molecular Weight (calculated)
48326.0 Da
IEP (calculated)
8.696
GRAVY (calculated)
-0.185
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTKKQGFFS ALREEVARGL SPGRARRRSA SNAAEGPDPE ACPGANCGGA GARREGWGQW VRGQLQLARA PAGAGADAGA GAGPAAAARR NDLRLLLGVM
101: GAPLAPVHVC AAEPLPHLSI KDTPIETSSA QYILQQYLAA SGGQRLLSSI RNSYAMGKVR MVATEFETGG RVVRNRMAAQ RAEPGRFVLW QMAPEMWYIE
201: LAVGGSKVHA GCNGKLVWRH TPWLGAHSAK GPVRPLRRAL QGLDPLTAAS MFAGARCIGE RKVNGEDCFI LKLCADPETL RARSEGLAEI IRHVLFGYFS
301: QKTGLLVHLE DSHLTRIQST TGGDAVYWET TINSFIEDYR PVEGIMIAHS GRSAVTLFRF GEAAMSHTKT RMEEAWSIEE VAFNVPGLSM DCFIPPTDIK
401: SGSISETVEL PQGEKSKVGL LLCHRAKVAA LEKADDNVAW SGALQLDCK
101: GAPLAPVHVC AAEPLPHLSI KDTPIETSSA QYILQQYLAA SGGQRLLSSI RNSYAMGKVR MVATEFETGG RVVRNRMAAQ RAEPGRFVLW QMAPEMWYIE
201: LAVGGSKVHA GCNGKLVWRH TPWLGAHSAK GPVRPLRRAL QGLDPLTAAS MFAGARCIGE RKVNGEDCFI LKLCADPETL RARSEGLAEI IRHVLFGYFS
301: QKTGLLVHLE DSHLTRIQST TGGDAVYWET TINSFIEDYR PVEGIMIAHS GRSAVTLFRF GEAAMSHTKT RMEEAWSIEE VAFNVPGLSM DCFIPPTDIK
401: SGSISETVEL PQGEKSKVGL LLCHRAKVAA LEKADDNVAW SGALQLDCK
001: MEKKQGFFSS LRDEVVRGLS PSRSRPRSRS ASPSRSTTPH MKALLWGRKK LIASSGCSGG GGVIGGERGG YYLSQPEPFI GRSSSLRPVM EGPDPDNGEV
101: SGVDSKRLGS GLSHWVKGQW SRAPSVTSTT PAYRKSDLRL LLGVMGAPLA PINVSSSSHL LHLTIRDSPT ETSSAQYILQ QYTAACGGHK LHNAIKNAYA
201: MGKLKMITSE LETPTGTVRN RNSTKSETGG FVLWQMNPDM WYVELSVGGS KVRAGCNGKL VWRHTPWLGS HTAKGPVRPL RRALQGLDPR TTATMFAESK
301: CVGERKVNGE DCFILKLCTD PETLRARSEG PAEIVRHILF GYFSQRTGLL AQIEDSQLTR IQSNDGDAVY WETTINSSLD DYKQVEGIMI AHSGRSVVTL
401: FRFGEVAMSH TRTKMEERWT IEEVAFNVPG LSLDCFIPPA DLRSGSLTEA CEYSGQEEKG KSSLALASTT AHRAKVAALE KGSFDNDPVW HIDV
101: SGVDSKRLGS GLSHWVKGQW SRAPSVTSTT PAYRKSDLRL LLGVMGAPLA PINVSSSSHL LHLTIRDSPT ETSSAQYILQ QYTAACGGHK LHNAIKNAYA
201: MGKLKMITSE LETPTGTVRN RNSTKSETGG FVLWQMNPDM WYVELSVGGS KVRAGCNGKL VWRHTPWLGS HTAKGPVRPL RRALQGLDPR TTATMFAESK
301: CVGERKVNGE DCFILKLCTD PETLRARSEG PAEIVRHILF GYFSQRTGLL AQIEDSQLTR IQSNDGDAVY WETTINSSLD DYKQVEGIMI AHSGRSVVTL
401: FRFGEVAMSH TRTKMEERWT IEEVAFNVPG LSLDCFIPPA DLRSGSLTEA CEYSGQEEKG KSSLALASTT AHRAKVAALE KGSFDNDPVW HIDV
Arabidopsis Description
Glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620) [Source:UniProtKB/TrEMBL;Acc:Q9C6D0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.