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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 2
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os12t0581300-01 Rice cytosol 33.18 94.3
TraesCS5D01G085100.1 Wheat cytosol 89.31 86.61
TraesCS5B01G078600.2 Wheat cytosol 82.63 86.28
HORVU5Hr1G018870.3 Barley cytosol, mitochondrion 87.97 85.87
TraesCS5A01G072300.1 Wheat cytosol 88.42 85.75
Zm00001d030837_P001 Maize cytosol, mitochondrion 87.31 82.01
EER91248 Sorghum cytosol 76.84 73.88
VIT_03s0091g00410.t01 Wine grape plastid 72.83 68.84
GSMUA_Achr7P00620_001 Banana mitochondrion 61.92 68.3
KRG91072 Soybean plastid 69.71 67.6
PGSC0003DMT400066530 Potato plastid 70.6 67.45
KRH35700 Soybean plastid 69.27 67.32
Solyc01g107350.2.1 Tomato plastid 70.16 67.02
CDY50147 Canola mitochondrion 64.81 66.29
CDX95439 Canola mitochondrion 64.14 66.21
VIT_18s0001g09450.t01 Wine grape plastid 68.6 65.67
CDY67693 Canola mitochondrion 64.59 63.88
PGSC0003DMT400055468 Potato plastid 66.82 63.83
KRH05611 Soybean plastid 67.48 63.66
KRH15430 Soybean plastid 67.04 63.64
CDY46168 Canola mitochondrion 64.14 63.16
Bra038214.1-P Field mustard mitochondrion, plastid 64.37 62.96
Bra022430.1-P Field mustard mitochondrion, plastid 65.48 62.69
AT3G19540.1 Thale cress plastid 67.26 62.27
CDY16530 Canola plastid 61.47 61.06
OQU92347 Sorghum mitochondrion, plastid 65.92 60.78
EER99634 Sorghum nucleus 70.38 60.54
CDY32838 Canola plastid 61.02 60.22
AT1G49840.1 Thale cress plastid 63.7 57.89
AT1G27690.1 Thale cress plastid 55.46 57.51
Bra014219.1-P Field mustard plastid 62.36 57.38
CDY03939 Canola cytosol 14.7 55.93
Solyc04g078190.2.1 Tomato nucleus, plastid 34.97 53.58
CDY67976 Canola mitochondrion, plastid 55.01 48.72
CDX90103 Canola mitochondrion, plastid 54.79 48.52
Bra010924.1-P Field mustard mitochondrion, plastid 56.57 47.57
EER95445 Sorghum cytosol 36.75 44.96
EER95119 Sorghum cytosol 41.65 42.21
OQU89854 Sorghum cytosol 36.08 42.19
EES03659 Sorghum cytosol 35.63 41.67
EES17962 Sorghum cytosol, nucleus, plastid 37.64 35.58
Protein Annotations
EnsemblPlants:OQU79433EnsemblPlantsGene:SORBI_3008G143600InterPro:DUF620ncoils:CoilPANTHER:PTHR31300PANTHER:PTHR31300:SF20
PFAM:PF04788ProteinID:OQU79433ProteinID:OQU79433.1SEG:segUniParc:UPI000B8BA6C3UniProt:A0A1Z5R6P2
MapMan:27.4.5.3:::::
Description
hypothetical protein
Coordinates
chr8:-:57488716..57491499
Molecular Weight (calculated)
48326.0 Da
IEP (calculated)
8.696
GRAVY (calculated)
-0.185
Length
449 amino acids
Sequence
(BLAST)
001: MDTKKQGFFS ALREEVARGL SPGRARRRSA SNAAEGPDPE ACPGANCGGA GARREGWGQW VRGQLQLARA PAGAGADAGA GAGPAAAARR NDLRLLLGVM
101: GAPLAPVHVC AAEPLPHLSI KDTPIETSSA QYILQQYLAA SGGQRLLSSI RNSYAMGKVR MVATEFETGG RVVRNRMAAQ RAEPGRFVLW QMAPEMWYIE
201: LAVGGSKVHA GCNGKLVWRH TPWLGAHSAK GPVRPLRRAL QGLDPLTAAS MFAGARCIGE RKVNGEDCFI LKLCADPETL RARSEGLAEI IRHVLFGYFS
301: QKTGLLVHLE DSHLTRIQST TGGDAVYWET TINSFIEDYR PVEGIMIAHS GRSAVTLFRF GEAAMSHTKT RMEEAWSIEE VAFNVPGLSM DCFIPPTDIK
401: SGSISETVEL PQGEKSKVGL LLCHRAKVAA LEKADDNVAW SGALQLDCK
Best Arabidopsis Sequence Match ( AT1G49840.1 )
(BLAST)
001: MEKKQGFFSS LRDEVVRGLS PSRSRPRSRS ASPSRSTTPH MKALLWGRKK LIASSGCSGG GGVIGGERGG YYLSQPEPFI GRSSSLRPVM EGPDPDNGEV
101: SGVDSKRLGS GLSHWVKGQW SRAPSVTSTT PAYRKSDLRL LLGVMGAPLA PINVSSSSHL LHLTIRDSPT ETSSAQYILQ QYTAACGGHK LHNAIKNAYA
201: MGKLKMITSE LETPTGTVRN RNSTKSETGG FVLWQMNPDM WYVELSVGGS KVRAGCNGKL VWRHTPWLGS HTAKGPVRPL RRALQGLDPR TTATMFAESK
301: CVGERKVNGE DCFILKLCTD PETLRARSEG PAEIVRHILF GYFSQRTGLL AQIEDSQLTR IQSNDGDAVY WETTINSSLD DYKQVEGIMI AHSGRSVVTL
401: FRFGEVAMSH TRTKMEERWT IEEVAFNVPG LSLDCFIPPA DLRSGSLTEA CEYSGQEEKG KSSLALASTT AHRAKVAALE KGSFDNDPVW HIDV
Arabidopsis Description
Glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620) [Source:UniProtKB/TrEMBL;Acc:Q9C6D0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.