Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G237300.1 | Wheat | cytosol, mitochondrion | 98.25 | 98.25 |
| TraesCS4D01G076200.1 | Wheat | cytosol, mitochondrion | 97.81 | 97.81 |
| Os03t0606100-01 | Rice | cytosol | 83.15 | 86.36 |
| TraesCS5B01G078600.2 | Wheat | cytosol | 75.93 | 80.7 |
| EER91248 | Sorghum | cytosol | 81.84 | 80.09 |
| Zm00001d013746_P001 | Maize | cytosol | 80.09 | 79.05 |
| HORVU4Hr1G013190.8 | Barley | mitochondrion | 84.46 | 76.44 |
| VIT_03s0091g00410.t01 | Wine grape | plastid | 71.55 | 68.84 |
| KRG91072 | Soybean | plastid | 69.15 | 68.25 |
| KRH35700 | Soybean | plastid | 68.93 | 68.18 |
| PGSC0003DMT400066530 | Potato | plastid | 69.58 | 67.66 |
| GSMUA_Achr7P00620_001 | Banana | mitochondrion | 60.18 | 67.57 |
| Solyc01g107350.2.1 | Tomato | plastid | 69.15 | 67.23 |
| CDY50147 | Canola | mitochondrion | 63.24 | 65.83 |
| CDX95439 | Canola | mitochondrion | 62.58 | 65.75 |
| VIT_18s0001g09450.t01 | Wine grape | plastid | 67.18 | 65.46 |
| PGSC0003DMT400055468 | Potato | plastid | 65.43 | 63.62 |
| KRH05611 | Soybean | plastid | 66.08 | 63.45 |
| KRH15430 | Soybean | plastid | 65.21 | 63.0 |
| CDY67693 | Canola | mitochondrion | 62.58 | 63.0 |
| Bra038214.1-P | Field mustard | mitochondrion, plastid | 62.8 | 62.53 |
| CDY46168 | Canola | mitochondrion | 62.36 | 62.5 |
| TraesCS2B01G211900.1 | Wheat | nucleus | 69.15 | 62.08 |
| Bra022430.1-P | Field mustard | mitochondrion, plastid | 63.68 | 62.05 |
| AT3G19540.1 | Thale cress | plastid | 65.21 | 61.44 |
| CDY16530 | Canola | plastid | 60.39 | 61.06 |
| CDY32838 | Canola | plastid | 60.39 | 60.66 |
| Bra014219.1-P | Field mustard | plastid | 61.27 | 57.38 |
| AT1G49840.1 | Thale cress | plastid | 61.71 | 57.09 |
| AT1G27690.1 | Thale cress | plastid | 53.39 | 56.35 |
| CDY03939 | Canola | cytosol | 14.44 | 55.93 |
| Solyc04g078190.2.1 | Tomato | nucleus, plastid | 35.67 | 55.63 |
| CDY67976 | Canola | mitochondrion, plastid | 53.17 | 47.93 |
| CDX90103 | Canola | mitochondrion, plastid | 52.95 | 47.73 |
| TraesCS4B01G282900.1 | Wheat | cytosol | 37.86 | 47.4 |
| Bra010924.1-P | Field mustard | mitochondrion, plastid | 54.7 | 46.82 |
| TraesCS4B01G211300.1 | Wheat | cytosol, nucleus, plastid | 42.67 | 43.72 |
| TraesCS3B01G333900.1 | Wheat | cytosol | 35.67 | 42.34 |
| TraesCS1B01G151200.1 | Wheat | nucleus | 36.54 | 35.76 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G077800.1 | EnsemblPlantsGene:TraesCS4B01G077800 | InterPro:DUF620 | PANTHER:PTHR31300 | PANTHER:PTHR31300:SF20 | PFAM:PF04788 |
| SEG:seg | MapMan:27.4.5.3 | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:74681285..74683169
Molecular Weight (calculated)
49370.1 Da
IEP (calculated)
8.853
GRAVY (calculated)
-0.247
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MERTQGFFAA LKQEVARGLS PARARRRSDS ADLDATALRF SGPGEMLAPL MEGPDPESGD GDARAAAGAR REGWGRWVRG QLARTPSSVA AAAAGAGAAR
101: NDLRLLLGVM GAPLAPVHVC AAEPLPHLSI KDTPIETSSA QYILQQYLAA SGGHRLLASV RNSYAMGKVR MVATEFENAG RLVKNRNAAR CAEPGRFVLW
201: QMAPEKWYIE LAVGGSKVHA GCNGKLVWRH TPWLGSHAAK GPVRPLRRAL QGLDPLTAAS MFAGARCIGE RKVNGEDCFI LKLCTDPETL KARTEGLAEI
301: IRHVMFGYFS QRTGLLVHIE DSHLTRIQST TGGDAVYWET TINSFIEDYR PVDGIMIAHS GRSAVTLFRF GEVAMSHTKT RMEEAWSIEE VAFNVPGLSM
401: DCFIPPTDIK SGSVSETVEL PHGGEKNKFG PPPGHRAKVA ALEKTDGGEL AWRGSHT
101: NDLRLLLGVM GAPLAPVHVC AAEPLPHLSI KDTPIETSSA QYILQQYLAA SGGHRLLASV RNSYAMGKVR MVATEFENAG RLVKNRNAAR CAEPGRFVLW
201: QMAPEKWYIE LAVGGSKVHA GCNGKLVWRH TPWLGSHAAK GPVRPLRRAL QGLDPLTAAS MFAGARCIGE RKVNGEDCFI LKLCTDPETL KARTEGLAEI
301: IRHVMFGYFS QRTGLLVHIE DSHLTRIQST TGGDAVYWET TINSFIEDYR PVDGIMIAHS GRSAVTLFRF GEVAMSHTKT RMEEAWSIEE VAFNVPGLSM
401: DCFIPPTDIK SGSVSETVEL PHGGEKNKFG PPPGHRAKVA ALEKTDGGEL AWRGSHT
001: MEKKQGFFSS LRDEVVRGLS PSRSRPRSRS ASPSRSTTPH MKALLWGRKK LIASSGCSGG GGVIGGERGG YYLSQPEPFI GRSSSLRPVM EGPDPDNGEV
101: SGVDSKRLGS GLSHWVKGQW SRAPSVTSTT PAYRKSDLRL LLGVMGAPLA PINVSSSSHL LHLTIRDSPT ETSSAQYILQ QYTAACGGHK LHNAIKNAYA
201: MGKLKMITSE LETPTGTVRN RNSTKSETGG FVLWQMNPDM WYVELSVGGS KVRAGCNGKL VWRHTPWLGS HTAKGPVRPL RRALQGLDPR TTATMFAESK
301: CVGERKVNGE DCFILKLCTD PETLRARSEG PAEIVRHILF GYFSQRTGLL AQIEDSQLTR IQSNDGDAVY WETTINSSLD DYKQVEGIMI AHSGRSVVTL
401: FRFGEVAMSH TRTKMEERWT IEEVAFNVPG LSLDCFIPPA DLRSGSLTEA CEYSGQEEKG KSSLALASTT AHRAKVAALE KGSFDNDPVW HIDV
101: SGVDSKRLGS GLSHWVKGQW SRAPSVTSTT PAYRKSDLRL LLGVMGAPLA PINVSSSSHL LHLTIRDSPT ETSSAQYILQ QYTAACGGHK LHNAIKNAYA
201: MGKLKMITSE LETPTGTVRN RNSTKSETGG FVLWQMNPDM WYVELSVGGS KVRAGCNGKL VWRHTPWLGS HTAKGPVRPL RRALQGLDPR TTATMFAESK
301: CVGERKVNGE DCFILKLCTD PETLRARSEG PAEIVRHILF GYFSQRTGLL AQIEDSQLTR IQSNDGDAVY WETTINSSLD DYKQVEGIMI AHSGRSVVTL
401: FRFGEVAMSH TRTKMEERWT IEEVAFNVPG LSLDCFIPPA DLRSGSLTEA CEYSGQEEKG KSSLALASTT AHRAKVAALE KGSFDNDPVW HIDV
Arabidopsis Description
Glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620) [Source:UniProtKB/TrEMBL;Acc:Q9C6D0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.