Factsheet for Zm00001d006078_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021038_P001	Maize	nucleus	63.54	66.3
OQU89743	Sorghum	mitochondrion, nucleus, plastid	64.58	59.62
HORVU5Hr1G075810.1	Barley	mitochondrion, nucleus	53.65	54.21
TraesCS5D01G291000.1	Wheat	cytosol, mitochondrion, nucleus	53.65	51.5
TraesCS5A01G283800.1	Wheat	mitochondrion, nucleus, peroxisome	50.52	51.05
TraesCS5B01G282300.1	Wheat	cytosol, mitochondrion, nucleus	52.08	51.02
Os09t0505000-00	Rice	nucleus	46.88	42.06
Zm00001d031586_P001	Maize	cytosol	43.75	33.6
Bra015092.1-P	Field mustard	nucleus	27.6	25.6
GSMUA_Achr5P25250_001	Banana	cytosol	35.42	25.19
AT3G25030.4	Thale cress	cytosol	31.25	24.0
CDY69745	Canola	cytosol	30.21	23.67
Solyc06g007880.1.1	Tomato	nucleus	22.4	23.12
CDY24647	Canola	nucleus	25.0	22.54
PGSC0003DMT400003096	Potato	nucleus	23.44	22.5
CDX77379	Canola	cytosol	29.17	22.4
Bra029623.1-P	Field mustard	nucleus	24.48	21.96
KRH07558	Soybean	nucleus	29.17	21.37
Bra001236.1-P	Field mustard	nucleus	24.48	21.27
AT4G13100.2	Thale cress	extracellular	29.17	21.13
KRH66042	Soybean	nucleus	29.69	20.88
CDY05318	Canola	nucleus	22.92	20.75
Zm00001d012045_P001	Maize	cytosol, mitochondrion, nucleus	30.73	19.73
Zm00001d042359_P001	Maize	cytosol, mitochondrion, nucleus	30.73	19.28
VIT_00s0186g00090.t01	Wine grape	cytosol, nucleus, plastid	29.69	17.48
Bra040362.1-P	Field mustard	nucleus	30.73	17.05
CDX74062	Canola	cytosol, nucleus, plastid	28.65	16.27
AT3G07120.1	Thale cress	nucleus	26.56	14.17

Protein Annotations

EntrezGene:103647569	Gene3D:3.30.40.10	MapMan:35.2	UniProt:A0A1D6ESQ0	InterPro:IPR001841	InterPro:IPR013083
ProteinID:ONM22736.1	PFAM:PF13920	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR12183	PANTHER:PTHR12183:SF21
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00022187F1	EnsemblPlantsGene:Zm00001d006078	EnsemblPlants:Zm00001d006078_P001	EnsemblPlants:Zm00001d006078_T001
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:

Description

RING/U-box superfamily protein

Coordinates

chr2:-:197542925..197543503

Molecular Weight (calculated)

20467.3 Da

IEP (calculated)

9.040

GRAVY (calculated)

-0.505

Length

192 amino acids

Sequence
(BLAST)

001: MEVRVPRPTR ERGMTLAEQL AASSNLRDLL KLRDDGVGGS EGEDRPATAP RRRTLLDAIR DADEGRRPPA VASRRATAVR PAPGGTATAA PAAAARGQSQ
101: RVSLLALLER AEQQWAWRRA GAEEAAPEEE GEEEEKGGGV GGRCCVCVAR GKGAAFVPCG HTFCRACARQ VRAGRGRCPL CNATIREVLN LF

Best Arabidopsis Sequence Match ( AT3G25030.2 )
(BLAST)

001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKRNGS VWISSNSIPS
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF

Arabidopsis Description

At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.