Factsheet for Os07t0520800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 1
extracellular 1
mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021645_P001	Maize	plastid	81.21	72.04
EER97310	Sorghum	plastid	80.0	71.74
TraesCS2B01G246600.1	Wheat	plastid	69.09	64.77
TraesCS2D01G226700.1	Wheat	plastid	67.88	63.64
TraesCS2A01G221000.1	Wheat	plastid	67.88	63.64
GSMUA_Achr6P29360_001	Banana	plastid	66.67	63.58
VIT_19s0177g00330.t01	Wine grape	cytosol	35.15	61.05
GSMUA_Achr9P11670_001	Banana	plastid	65.45	60.67
CDY07336	Canola	plastid	58.79	58.43
VIT_19s0177g00340.t01	Wine grape	plastid	60.61	58.14
KRG98845	Soybean	plastid	61.82	57.63
CDY19631	Canola	plastid	61.82	57.63
Bra035772.1-P	Field mustard	plastid	61.82	57.63
KRH46109	Soybean	plastid	63.03	57.46
CDY29435	Canola	plastid	61.82	57.3
CDY29612	Canola	plastid	60.0	56.25
CDY25188	Canola	plastid	60.0	56.25
Bra030468.1-P	Field mustard	plastid	60.0	56.25
Bra018876.1-P	Field mustard	plastid	60.0	56.25
AT1G50900.1	Thale cress	plastid	59.39	56.0
CDY25178	Canola	plastid	59.39	55.37
PGSC0003DMT400037299	Potato	plastid	56.97	54.65
Solyc10g006370.2.1	Tomato	plastid	56.36	54.07
GSMUA_Achr9P30190_001	Banana	plastid	52.12	48.04

Protein Annotations

Gene3D:1.25.40.20	MapMan:23.1.7.1	UniProt:A0A0P0X6M7	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:BAT01805.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0015031	InterPro:IPR020683	InterPro:IPR036770
EnsemblPlantsGene:Os07g0520800	EnsemblPlants:Os07t0520800-01	PFscan:PS50297	SUPFAM:SSF48403	UniParc:UPI0000E12B49	SEG:seg

Description

Ankyrin repeat-containing domain domain containing protein. (Os07t0520800-01)

Coordinates

chr7:+:20113612..20115182

Molecular Weight (calculated)

17796.9 Da

IEP (calculated)

4.851

GRAVY (calculated)

-0.273

Length

165 amino acids

Sequence
(BLAST)

001: FQLSARASSA SAAAAARRSP RAAARLGWLR PSRLSAVVPA SESGRVGPTC FFKFGNKDAE GAGIYGSQGR DDFDRDDVEQ YFNYMGMLAV EGTYDKMEAL
101: LNQDIHPVDI LLMLAASEGD KPKLEELLRA GAKYDVKDVD GRTALDRAAD DTREFILGFA ATLAA

Best Arabidopsis Sequence Match ( AT1G50900.1 )
(BLAST)

001: MASSSISFSC APSLATSLFS TTSSSPRLLS SRFLGTRNLK LRIRPARLGP SNGSRTTCWF KFGKNGVDAE NAGIYGSQSR DDFDRDDVEQ YFNYMGMLAV
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA

Arabidopsis Description

LTDProtein LHCP TRANSLOCATION DEFECT [Source:UniProtKB/Swiss-Prot;Acc:Q8VY88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.