CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018876.1-P	Field mustard	plastid	100.0	100.0
CDY25178	Canola	plastid	96.02	95.48
CDY29612	Canola	plastid	93.75	93.75
CDY07336	Canola	plastid	86.36	91.57
AT1G50900.1	Thale cress	plastid	86.93	87.43
CDY29435	Canola	plastid	80.11	79.21
CDY19631	Canola	plastid	79.55	79.1
VIT_19s0177g00340.t01	Wine grape	plastid	69.32	70.93
GSMUA_Achr6P29360_001	Banana	plastid	66.48	67.63
GSMUA_Achr9P11670_001	Banana	plastid	67.61	66.85
KRG98845	Soybean	plastid	67.05	66.67
KRH46109	Soybean	plastid	67.05	65.19
PGSC0003DMT400037299	Potato	plastid	63.64	65.12
Solyc10g006370.2.1	Tomato	plastid	62.5	63.95
Os07t0520800-01	Rice	plasma membrane, plastid	56.25	60.0
TraesCS2D01G226700.1	Wheat	plastid	57.95	57.95
VIT_19s0177g00330.t01	Wine grape	cytosol	31.25	57.89
TraesCS2A01G221000.1	Wheat	plastid	57.39	57.39
TraesCS2B01G246600.1	Wheat	plastid	57.39	57.39
EER97310	Sorghum	plastid	59.66	57.07
Zm00001d021645_P001	Maize	plastid	60.23	56.99
GSMUA_Achr9P30190_001	Banana	plastid	52.84	51.96

Protein Annotations

EnsemblPlants:CDY25188	EnsemblPlantsGene:GSBRNA2T00029137001	Gene3D:1.25.40.20	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:IPR020683
InterPro:IPR036770	PFscan:PS50297	ProteinID:CDY25188	ProteinID:CDY25188.1	SEG:seg	SUPFAM:SSF48403
UniParc:UPI000253EA79	UniProt:A0A078GKS4	MapMan:23.1.7.1	:	:	:

Description

BnaC06g04130DBnaC06g04130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKS4]

Coordinates

chrLK032170:+:234227..234843

Molecular Weight (calculated)

19371.9 Da

IEP (calculated)

6.522

GRAVY (calculated)

-0.420

Length

176 amino acids

Sequence
(BLAST)

001: MASCSSISFS CAPSLFSTKP INHSSSPEQL SSRFLGTRNL KLRIRPNRLG PSNGSRTTCW FKFGKNGVDA ESAGIYGSQT RDDFDKDDVE QYFNYMGMLA
101: VEGTYSKMEA LLNLNIHPVD ILLMLAATEG DKPKIEELLR AGASYSVKDA DGRTALDRAN SEEIRDLILG YSTQKA

Best Arabidopsis Sequence Match ( AT1G50900.1 )
(BLAST)

001: MASSSISFSC APSLATSLFS TTSSSPRLLS SRFLGTRNLK LRIRPARLGP SNGSRTTCWF KFGKNGVDAE NAGIYGSQSR DDFDRDDVEQ YFNYMGMLAV
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA

Arabidopsis Description

LTDProtein LHCP TRANSLOCATION DEFECT [Source:UniProtKB/Swiss-Prot;Acc:Q8VY88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.