Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25188 | Canola | plastid | 100.0 | 100.0 |
| Bra030468.1-P | Field mustard | plastid | 93.75 | 93.75 |
| AT1G50900.1 | Thale cress | plastid | 86.93 | 87.43 |
| Bra035772.1-P | Field mustard | plastid | 79.55 | 79.1 |
| VIT_19s0177g00340.t01 | Wine grape | plastid | 69.32 | 70.93 |
| GSMUA_Achr6P29360_001 | Banana | plastid | 66.48 | 67.63 |
| GSMUA_Achr9P11670_001 | Banana | plastid | 67.61 | 66.85 |
| KRG98845 | Soybean | plastid | 67.05 | 66.67 |
| KRH46109 | Soybean | plastid | 67.05 | 65.19 |
| PGSC0003DMT400037299 | Potato | plastid | 63.64 | 65.12 |
| Solyc10g006370.2.1 | Tomato | plastid | 62.5 | 63.95 |
| Os07t0520800-01 | Rice | plasma membrane, plastid | 56.25 | 60.0 |
| TraesCS2D01G226700.1 | Wheat | plastid | 57.95 | 57.95 |
| VIT_19s0177g00330.t01 | Wine grape | cytosol | 31.25 | 57.89 |
| TraesCS2A01G221000.1 | Wheat | plastid | 57.39 | 57.39 |
| TraesCS2B01G246600.1 | Wheat | plastid | 57.39 | 57.39 |
| EER97310 | Sorghum | plastid | 59.66 | 57.07 |
| Zm00001d021645_P001 | Maize | plastid | 60.23 | 56.99 |
| GSMUA_Achr9P30190_001 | Banana | plastid | 52.84 | 51.96 |
Protein Annotations
| EnsemblPlants:Bra018876.1 | EnsemblPlants:Bra018876.1-P | EnsemblPlantsGene:Bra018876 | Gene3D:1.25.40.20 | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf |
| InterPro:IPR020683 | InterPro:IPR036770 | PFscan:PS50297 | SEG:seg | SUPFAM:SSF48403 | UniParc:UPI000253EA79 |
| UniProt:M4DQT3 | MapMan:23.1.7.1 | : | : | : | : |
Description
AT1G50900 (E=4e-079) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Coordinates
chrA06:-:1485569..1486185
Molecular Weight (calculated)
19371.9 Da
IEP (calculated)
6.522
GRAVY (calculated)
-0.420
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MASCSSISFS CAPSLFSTKP INHSSSPEQL SSRFLGTRNL KLRIRPNRLG PSNGSRTTCW FKFGKNGVDA ESAGIYGSQT RDDFDKDDVE QYFNYMGMLA
101: VEGTYSKMEA LLNLNIHPVD ILLMLAATEG DKPKIEELLR AGASYSVKDA DGRTALDRAN SEEIRDLILG YSTQKA
101: VEGTYSKMEA LLNLNIHPVD ILLMLAATEG DKPKIEELLR AGASYSVKDA DGRTALDRAN SEEIRDLILG YSTQKA
001: MASSSISFSC APSLATSLFS TTSSSPRLLS SRFLGTRNLK LRIRPARLGP SNGSRTTCWF KFGKNGVDAE NAGIYGSQSR DDFDRDDVEQ YFNYMGMLAV
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA
Arabidopsis Description
LTDProtein LHCP TRANSLOCATION DEFECT [Source:UniProtKB/Swiss-Prot;Acc:Q8VY88]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.