Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P11670_001 | Banana | plastid | 86.71 | 84.27 |
| VIT_19s0177g00340.t01 | Wine grape | plastid | 69.94 | 70.35 |
| KRH46109 | Soybean | plastid | 69.94 | 66.85 |
| KRG98845 | Soybean | plastid | 68.21 | 66.67 |
| Os07t0520800-01 | Rice | plasma membrane, plastid | 63.58 | 66.67 |
| CDY25188 | Canola | plastid | 67.63 | 66.48 |
| Bra018876.1-P | Field mustard | plastid | 67.63 | 66.48 |
| CDY07336 | Canola | plastid | 63.58 | 66.27 |
| Bra035772.1-P | Field mustard | plastid | 67.63 | 66.1 |
| CDY19631 | Canola | plastid | 67.63 | 66.1 |
| CDY29612 | Canola | plastid | 67.05 | 65.91 |
| Bra030468.1-P | Field mustard | plastid | 67.05 | 65.91 |
| CDY29435 | Canola | plastid | 67.63 | 65.73 |
| CDY25178 | Canola | plastid | 67.05 | 65.54 |
| PGSC0003DMT400037299 | Potato | plastid | 63.58 | 63.95 |
| AT1G50900.1 | Thale cress | plastid | 64.16 | 63.43 |
| Solyc10g006370.2.1 | Tomato | plastid | 63.01 | 63.37 |
| EER97310 | Sorghum | plastid | 66.47 | 62.5 |
| TraesCS2A01G221000.1 | Wheat | plastid | 63.58 | 62.5 |
| TraesCS2D01G226700.1 | Wheat | plastid | 63.58 | 62.5 |
| TraesCS2B01G246600.1 | Wheat | plastid | 63.01 | 61.93 |
| Zm00001d021645_P001 | Maize | plastid | 66.47 | 61.83 |
| GSMUA_Achr9P30190_001 | Banana | plastid | 61.85 | 59.78 |
| VIT_19s0177g00330.t01 | Wine grape | cytosol | 31.79 | 57.89 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P29360_001 | EnsemblPlants:GSMUA_Achr6T29360_001 | EnsemblPlantsGene:GSMUA_Achr6G29360_001 | Gene3D:1.25.40.20 | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf |
| InterPro:IPR020683 | InterPro:IPR036770 | PFscan:PS50297 | SEG:seg | SUPFAM:SSF48403 | UniParc:UPI000295BC41 |
| UniProt:M0TB81 | MapMan:23.1.7.1 | : | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G29360_001]
Coordinates
chr6:-:29599930..29602300
Molecular Weight (calculated)
19162.7 Da
IEP (calculated)
5.342
GRAVY (calculated)
-0.438
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MASIPCNFYF QIPSPSSSSA KPSSSFLSLT RRLGWVKPSK MRSKVGPETN GSRTTCWFRF GNRGVDAEGA GIYGSQTRDD FDRDDVEQYF NYMGMLAVEG
101: SYDKMESLLS QNIHPVDILL MLAASEGDKP KIEELLRAGA KYDVKDADGR TALDRAVSEE IKELILGYPV KTA
101: SYDKMESLLS QNIHPVDILL MLAASEGDKP KIEELLRAGA KYDVKDADGR TALDRAVSEE IKELILGYPV KTA
001: MASSSISFSC APSLATSLFS TTSSSPRLLS SRFLGTRNLK LRIRPARLGP SNGSRTTCWF KFGKNGVDAE NAGIYGSQSR DDFDRDDVEQ YFNYMGMLAV
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA
Arabidopsis Description
LTDProtein LHCP TRANSLOCATION DEFECT [Source:UniProtKB/Swiss-Prot;Acc:Q8VY88]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.