Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030468.1-P | Field mustard | plastid | 96.39 | 90.91 |
| CDY29612 | Canola | plastid | 96.39 | 90.91 |
| CDY25188 | Canola | plastid | 91.57 | 86.36 |
| CDY25178 | Canola | plastid | 88.55 | 83.05 |
| AT1G50900.1 | Thale cress | plastid | 85.54 | 81.14 |
| CDY19631 | Canola | plastid | 80.12 | 75.14 |
| CDY29435 | Canola | plastid | 80.12 | 74.72 |
| VIT_19s0177g00340.t01 | Wine grape | plastid | 68.07 | 65.7 |
| GSMUA_Achr6P29360_001 | Banana | plastid | 66.27 | 63.58 |
| KRG98845 | Soybean | plastid | 66.87 | 62.71 |
| GSMUA_Achr9P11670_001 | Banana | plastid | 66.87 | 62.36 |
| PGSC0003DMT400037299 | Potato | plastid | 64.46 | 62.21 |
| KRH46109 | Soybean | plastid | 66.87 | 61.33 |
| Solyc10g006370.2.1 | Tomato | plastid | 63.25 | 61.05 |
| Os07t0520800-01 | Rice | plasma membrane, plastid | 58.43 | 58.79 |
| VIT_19s0177g00330.t01 | Wine grape | cytosol | 32.53 | 56.84 |
| TraesCS2B01G246600.1 | Wheat | plastid | 59.04 | 55.68 |
| TraesCS2D01G226700.1 | Wheat | plastid | 59.04 | 55.68 |
| TraesCS2A01G221000.1 | Wheat | plastid | 58.43 | 55.11 |
| EER97310 | Sorghum | plastid | 60.84 | 54.89 |
| Zm00001d021645_P001 | Maize | plastid | 60.24 | 53.76 |
| GSMUA_Achr9P30190_001 | Banana | plastid | 54.82 | 50.84 |
Protein Annotations
| EnsemblPlants:CDY07336 | EnsemblPlantsGene:GSBRNA2T00124288001 | Gene3D:1.25.40.20 | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | InterPro:IPR020683 |
| InterPro:IPR036770 | PFscan:PS50297 | ProteinID:CDY07336 | ProteinID:CDY07336.1 | SEG:seg | SUPFAM:SSF48403 |
| UniParc:UPI0004EEB9B1 | UniProt:A0A078F1Q7 | MapMan:23.1.7.1 | : | : | : |
Description
BnaC05g26980DBnaC05g26980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F1Q7]
Coordinates
chrLK031977:+:993838..994518
Molecular Weight (calculated)
18450.0 Da
IEP (calculated)
9.613
GRAVY (calculated)
-0.462
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTSLVSTKS INHSSTRTLL SSRFLGTRNL KLRIRPARLG PSNGSRTTCW FKFGKNGVDA ESAGIYGSQS RDDFDKDDVE QYFNYMGMLA VEGTYSKMEA
101: LLNLNIHPVD ILLMLAATKG DKPKFEELLR AGASYTVKDA DGRTALDRAN SEEIRDLILG YSTQKA
101: LLNLNIHPVD ILLMLAATKG DKPKFEELLR AGASYTVKDA DGRTALDRAN SEEIRDLILG YSTQKA
001: MASSSISFSC APSLATSLFS TTSSSPRLLS SRFLGTRNLK LRIRPARLGP SNGSRTTCWF KFGKNGVDAE NAGIYGSQSR DDFDRDDVEQ YFNYMGMLAV
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA
Arabidopsis Description
LTDProtein LHCP TRANSLOCATION DEFECT [Source:UniProtKB/Swiss-Prot;Acc:Q8VY88]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.