Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- cytosol 1
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400037299 | Potato | plastid | 97.09 | 97.09 |
| VIT_19s0177g00340.t01 | Wine grape | plastid | 69.77 | 69.77 |
| GSMUA_Achr9P11670_001 | Banana | plastid | 69.19 | 66.85 |
| Bra035772.1-P | Field mustard | plastid | 67.44 | 65.54 |
| CDY19631 | Canola | plastid | 67.44 | 65.54 |
| CDY29435 | Canola | plastid | 67.44 | 65.17 |
| CDY07336 | Canola | plastid | 61.05 | 63.25 |
| VIT_19s0177g00330.t01 | Wine grape | cytosol | 34.88 | 63.16 |
| GSMUA_Achr6P29360_001 | Banana | plastid | 63.37 | 63.01 |
| KRG98845 | Soybean | plastid | 64.53 | 62.71 |
| Bra018876.1-P | Field mustard | plastid | 63.95 | 62.5 |
| CDY25188 | Canola | plastid | 63.95 | 62.5 |
| KRH46109 | Soybean | plastid | 65.7 | 62.43 |
| CDY29612 | Canola | plastid | 63.37 | 61.93 |
| Bra030468.1-P | Field mustard | plastid | 63.37 | 61.93 |
| CDY25178 | Canola | plastid | 62.79 | 61.02 |
| AT1G50900.1 | Thale cress | plastid | 61.05 | 60.0 |
| TraesCS2A01G221000.1 | Wheat | plastid | 59.3 | 57.95 |
| TraesCS2B01G246600.1 | Wheat | plastid | 59.3 | 57.95 |
| TraesCS2D01G226700.1 | Wheat | plastid | 59.3 | 57.95 |
| EER97310 | Sorghum | plastid | 60.47 | 56.52 |
| Zm00001d021645_P001 | Maize | plastid | 61.05 | 56.45 |
| Os07t0520800-01 | Rice | plasma membrane, plastid | 54.07 | 56.36 |
| GSMUA_Achr9P30190_001 | Banana | plastid | 52.33 | 50.28 |
Protein Annotations
| EnsemblPlants:Solyc10g006370.2.1 | EnsemblPlantsGene:Solyc10g006370.2 | Gene3D:1.25.40.20 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009536 | GO:GO:0009570 | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | InterPro:IPR020683 |
| InterPro:IPR036770 | PFscan:PS50297 | SEG:seg | SUPFAM:SSF48403 | UniParc:UPI000276AB8D | UniProt:K4CXG8 |
| MapMan:23.1.7.1 | : | : | : | : | : |
Description
Protein LHCP TRANSLOCATION DEFECT [Source:Projected from Arabidopsis thaliana (AT1G50900) UniProtKB/Swiss-Prot;Acc:Q8VY88]
Coordinates
chr10:+:993392..996694
Molecular Weight (calculated)
19169.6 Da
IEP (calculated)
4.977
GRAVY (calculated)
-0.333
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MASIPCTLHL TFSSSRPNFF SSCSVRLNSC FMGFSKLKSI GWCRPNGLGP NCGSRTTCWF NFRQNAETAG VYGSQSRDDF DRDDVEQYFN YMGMLAVEGT
101: YDKMEALLSQ NIHPVDILLL MASSEGDLPK IEELLRAGAD YTVKDADGRT ALDRAANDEV KDFIVNYKAQ KA
101: YDKMEALLSQ NIHPVDILLL MASSEGDLPK IEELLRAGAD YTVKDADGRT ALDRAANDEV KDFIVNYKAQ KA
001: MASSSISFSC APSLATSLFS TTSSSPRLLS SRFLGTRNLK LRIRPARLGP SNGSRTTCWF KFGKNGVDAE NAGIYGSQSR DDFDRDDVEQ YFNYMGMLAV
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA
Arabidopsis Description
LTDProtein LHCP TRANSLOCATION DEFECT [Source:UniProtKB/Swiss-Prot;Acc:Q8VY88]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.