Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25188 | Canola | plastid | 95.48 | 96.02 |
| CDY29612 | Canola | plastid | 90.96 | 91.48 |
| AT1G50900.1 | Thale cress | plastid | 87.57 | 88.57 |
| CDY07336 | Canola | plastid | 83.05 | 88.55 |
| CDY29435 | Canola | plastid | 78.53 | 78.09 |
| CDY19631 | Canola | plastid | 77.97 | 77.97 |
| VIT_19s0177g00340.t01 | Wine grape | plastid | 68.36 | 70.35 |
| GSMUA_Achr6P29360_001 | Banana | plastid | 65.54 | 67.05 |
| KRG98845 | Soybean | plastid | 66.67 | 66.67 |
| GSMUA_Achr9P11670_001 | Banana | plastid | 66.67 | 66.29 |
| KRH46109 | Soybean | plastid | 66.1 | 64.64 |
| PGSC0003DMT400037299 | Potato | plastid | 62.15 | 63.95 |
| Solyc10g006370.2.1 | Tomato | plastid | 61.02 | 62.79 |
| Os07t0520800-01 | Rice | plasma membrane, plastid | 55.37 | 59.39 |
| VIT_19s0177g00330.t01 | Wine grape | cytosol | 30.51 | 56.84 |
| TraesCS2A01G221000.1 | Wheat | plastid | 56.5 | 56.82 |
| TraesCS2D01G226700.1 | Wheat | plastid | 56.5 | 56.82 |
| EER97310 | Sorghum | plastid | 58.76 | 56.52 |
| Zm00001d021645_P001 | Maize | plastid | 59.32 | 56.45 |
| TraesCS2B01G246600.1 | Wheat | plastid | 55.93 | 56.25 |
| GSMUA_Achr9P30190_001 | Banana | plastid | 51.98 | 51.4 |
Protein Annotations
| EnsemblPlants:CDY25178 | EnsemblPlantsGene:GSBRNA2T00029116001 | Gene3D:1.25.40.20 | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | InterPro:IPR020683 |
| InterPro:IPR036770 | PFscan:PS50297 | ProteinID:CDY25178 | ProteinID:CDY25178.1 | SEG:seg | SUPFAM:SSF48403 |
| UniParc:UPI0004EE6A5B | UniProt:A0A078GKR7 | MapMan:23.1.7.1 | : | : | : |
Description
BnaC06g04030DBnaC06g04030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKR7]
Coordinates
chrLK032170:+:132500..133282
Molecular Weight (calculated)
19451.0 Da
IEP (calculated)
8.181
GRAVY (calculated)
-0.356
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSISFS CAPSLFSIKP ITSSSSFPKQ LSSRFLGTRN LKIRIRPNRL GPSNGSRTTC WFKFGKNGVD AESAGIYGSQ TRDDFDKDDV EQYFNYMGML
101: AVEGTYSKME ALLNLNIHPV DILLMLAATE GDKPKIEELL RAGASYSVKD ADGRTAIDRA NSEEIRDLIL GYSTQKA
101: AVEGTYSKME ALLNLNIHPV DILLMLAATE GDKPKIEELL RAGASYSVKD ADGRTAIDRA NSEEIRDLIL GYSTQKA
001: MASSSISFSC APSLATSLFS TTSSSPRLLS SRFLGTRNLK LRIRPARLGP SNGSRTTCWF KFGKNGVDAE NAGIYGSQSR DDFDRDDVEQ YFNYMGMLAV
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA
Arabidopsis Description
LTDProtein LHCP TRANSLOCATION DEFECT [Source:UniProtKB/Swiss-Prot;Acc:Q8VY88]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.