Factsheet for AT1G50900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25178	Canola	plastid	88.57	87.57
Bra030468.1-P	Field mustard	plastid	88.0	87.5
CDY29612	Canola	plastid	88.0	87.5
CDY25188	Canola	plastid	87.43	86.93
Bra018876.1-P	Field mustard	plastid	87.43	86.93
CDY07336	Canola	plastid	81.14	85.54
VIT_19s0177g00340.t01	Wine grape	plastid	65.71	66.86
KRG98845	Soybean	plastid	65.14	64.41
GSMUA_Achr6P29360_001	Banana	plastid	63.43	64.16
GSMUA_Achr9P11670_001	Banana	plastid	64.57	63.48
KRH46109	Soybean	plastid	65.14	62.98
PGSC0003DMT400037299	Potato	plastid	61.14	62.21
Solyc10g006370.2.1	Tomato	plastid	60.0	61.05
Os07t0520800-01	Rice	plasma membrane, plastid	56.0	59.39
TraesCS2A01G221000.1	Wheat	plastid	56.57	56.25
TraesCS2D01G226700.1	Wheat	plastid	56.57	56.25
TraesCS2B01G246600.1	Wheat	plastid	56.0	55.68
EER97310	Sorghum	plastid	57.71	54.89
Zm00001d021645_P001	Maize	plastid	58.29	54.84
VIT_19s0177g00330.t01	Wine grape	cytosol	29.14	53.68
GSMUA_Achr9P30190_001	Banana	plastid	52.0	50.84

Protein Annotations

Gene3D:1.25.40.20	MapMan:23.1.7.1	EntrezGene:841512	UniProt:A0A178W808	ProteinID:AAG50930.1	ProteinID:AEE32599.1
ArrayExpress:AT1G50900	EnsemblPlantsGene:AT1G50900	RefSeq:AT1G50900	TAIR:AT1G50900	RefSeq:AT1G50900-TAIR-G	EnsemblPlants:AT1G50900.1
TAIR:AT1G50900.1	EMBL:AY072348	EMBL:AY085852	EMBL:AY114573	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	Unigene:At.71538	Symbol:GDC1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009628	GO:GO:0009941	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043
GO:GO:0080167	GO:GO:0090391	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	RefSeq:NP_564580.1
ProteinID:OAP14597.1	PO:PO:0000003	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007131
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009001	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025034	PO:PO:0025281	PFscan:PS50088
PFscan:PS50297	UniProt:Q8VY88	SUPFAM:SSF48403	UniParc:UPI00000A2278	SEG:seg	:

Description

LTDProtein LHCP TRANSLOCATION DEFECT [Source:UniProtKB/Swiss-Prot;Acc:Q8VY88]

Coordinates

chr1:+:18866197..18867204

Molecular Weight (calculated)

19190.7 Da

IEP (calculated)

5.967

GRAVY (calculated)

-0.338

Length

175 amino acids

Sequence
(BLAST)

001: MASSSISFSC APSLATSLFS TTSSSPRLLS SRFLGTRNLK LRIRPARLGP SNGSRTTCWF KFGKNGVDAE NAGIYGSQSR DDFDRDDVEQ YFNYMGMLAV
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.