Factsheet for PGSC0003DMT400037299

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g006370.2.1	Tomato	plastid	97.09	97.09
VIT_19s0177g00340.t01	Wine grape	plastid	69.77	69.77
GSMUA_Achr9P11670_001	Banana	plastid	68.6	66.29
Bra035772.1-P	Field mustard	plastid	66.86	64.97
CDY19631	Canola	plastid	66.86	64.97
CDY29435	Canola	plastid	66.86	64.61
CDY07336	Canola	plastid	62.21	64.46
Bra018876.1-P	Field mustard	plastid	65.12	63.64
CDY25188	Canola	plastid	65.12	63.64
GSMUA_Achr6P29360_001	Banana	plastid	63.95	63.58
CDY29612	Canola	plastid	64.53	63.07
Bra030468.1-P	Field mustard	plastid	64.53	63.07
KRG98845	Soybean	plastid	64.53	62.71
KRH46109	Soybean	plastid	65.7	62.43
CDY25178	Canola	plastid	63.95	62.15
VIT_19s0177g00330.t01	Wine grape	cytosol	34.3	62.11
AT1G50900.1	Thale cress	plastid	62.21	61.14
TraesCS2A01G221000.1	Wheat	plastid	59.88	58.52
TraesCS2B01G246600.1	Wheat	plastid	59.88	58.52
TraesCS2D01G226700.1	Wheat	plastid	59.88	58.52
Os07t0520800-01	Rice	plasma membrane, plastid	54.65	56.97
EER97310	Sorghum	plastid	60.47	56.52
Zm00001d021645_P001	Maize	plastid	61.05	56.45
GSMUA_Achr9P30190_001	Banana	plastid	51.16	49.16

Protein Annotations

EnsemblPlants:PGSC0003DMT400037299	EnsemblPlantsGene:PGSC0003DMG400014394	EntrezGene:102589462	Gene3D:1.25.40.20	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:IPR020683	InterPro:IPR036770	PFscan:PS50297	PGSC:PGSC0003DMG400014394	RefSeq:XP_006352499.1	SEG:seg
SUPFAM:SSF48403	UniParc:UPI000295FD93	UniProt:M1B554	MapMan:23.1.7.1	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400014394]

Coordinates

chr10:+:1294582..1298224

Molecular Weight (calculated)

19020.4 Da

IEP (calculated)

4.977

GRAVY (calculated)

-0.326

Length

172 amino acids

Sequence
(BLAST)

001: MASIPCTLHL TFSSSRPNFS SSCSVKLNSC FMGVSKLKSI GWCRPSGLGP NCGSRTTCWF NFRQNAETAG VYGSQSRDDF DRDDVEQYFN YMGMLAVEGT
101: YDKMEALLSQ NIHPVDILLL MASTEGDLPK IEELLRAGAD YTVKDADGRT ALDRAANDEV KDFIVNYKAQ KA

Best Arabidopsis Sequence Match ( AT1G50900.1 )
(BLAST)

001: MASSSISFSC APSLATSLFS TTSSSPRLLS SRFLGTRNLK LRIRPARLGP SNGSRTTCWF KFGKNGVDAE NAGIYGSQSR DDFDRDDVEQ YFNYMGMLAV
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA

Arabidopsis Description

LTDProtein LHCP TRANSLOCATION DEFECT [Source:UniProtKB/Swiss-Prot;Acc:Q8VY88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.