Factsheet for VIT_19s0177g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P11670_001	Banana	plastid	73.84	71.35
KRG98845	Soybean	plastid	72.67	70.62
KRH46109	Soybean	plastid	73.84	70.17
GSMUA_Achr6P29360_001	Banana	plastid	70.35	69.94
Solyc10g006370.2.1	Tomato	plastid	69.77	69.77
PGSC0003DMT400037299	Potato	plastid	69.77	69.77
Bra018876.1-P	Field mustard	plastid	70.93	69.32
CDY25188	Canola	plastid	70.93	69.32
Bra035772.1-P	Field mustard	plastid	70.93	68.93
CDY19631	Canola	plastid	70.93	68.93
CDY29435	Canola	plastid	70.93	68.54
VIT_19s0177g00330.t01	Wine grape	cytosol	37.79	68.42
CDY25178	Canola	plastid	70.35	68.36
CDY07336	Canola	plastid	65.7	68.07
CDY29612	Canola	plastid	69.19	67.61
Bra030468.1-P	Field mustard	plastid	69.19	67.61
AT1G50900.1	Thale cress	plastid	66.86	65.71
Zm00001d021645_P001	Maize	plastid	66.86	61.83
EER97310	Sorghum	plastid	65.12	60.87
Os07t0520800-01	Rice	plasma membrane, plastid	58.14	60.61
TraesCS2A01G221000.1	Wheat	plastid	61.63	60.23
TraesCS2D01G226700.1	Wheat	plastid	61.63	60.23
TraesCS2B01G246600.1	Wheat	plastid	61.05	59.66
GSMUA_Achr9P30190_001	Banana	plastid	59.3	56.98

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100260680	wikigene:100260680	MapMan:23.1.7.1	EMBL:AM450382	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	ProteinID:CAN65357	ProteinID:CAN65357.1	ProteinID:CBI23956	ProteinID:CBI23956.3	UniProt:D7T0C7
EMBL:FN595498	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009536
GO:GO:0009570	InterPro:IPR020683	InterPro:IPR036770	EntrezGene:LOC100260680	wikigene:LOC100260680	PFscan:PS50297
SUPFAM:SSF48403	UniParc:UPI00015C7C24	ArrayExpress:VIT_19s0177g00340	EnsemblPlantsGene:VIT_19s0177g00340	EnsemblPlants:VIT_19s0177g00340.t01	unigene:Vvi.1550
RefSeq:XP_002281441	RefSeq:XP_002281441.1	:	:	:	:

Description

No Description!

Coordinates

chr19:-:6182005..6184606

Molecular Weight (calculated)

18967.4 Da

IEP (calculated)

4.795

GRAVY (calculated)

-0.372

Length

172 amino acids

Sequence
(BLAST)

001: MASIPCTTHL LFTSKPQISP SNPPIFTSQL LGIPRKLSWS TPTRLGPSNG SRATCWFRFG NRGVDAEGAG IYGSQTRDDF DRDDVEQYFN YMGMLAVEGT
101: YDKMEALLSQ NIHPVDILLM MAASEGDQPK IEELLRAGAS YTVKDADGRT ALERAANDEI KDLILNFSTQ KA

Best Arabidopsis Sequence Match ( AT1G50900.1 )
(BLAST)

001: MASSSISFSC APSLATSLFS TTSSSPRLLS SRFLGTRNLK LRIRPARLGP SNGSRTTCWF KFGKNGVDAE NAGIYGSQSR DDFDRDDVEQ YFNYMGMLAV
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA

Arabidopsis Description

LTDProtein LHCP TRANSLOCATION DEFECT [Source:UniProtKB/Swiss-Prot;Acc:Q8VY88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.