Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G246600.1 | Wheat | plastid | 97.16 | 97.16 |
| TraesCS2A01G221000.1 | Wheat | plastid | 97.16 | 97.16 |
| EER97310 | Sorghum | plastid | 71.59 | 68.48 |
| Os07t0520800-01 | Rice | plasma membrane, plastid | 63.64 | 67.88 |
| Zm00001d021645_P001 | Maize | plastid | 70.45 | 66.67 |
| GSMUA_Achr6P29360_001 | Banana | plastid | 62.5 | 63.58 |
| GSMUA_Achr9P11670_001 | Banana | plastid | 62.5 | 61.8 |
| VIT_19s0177g00340.t01 | Wine grape | plastid | 60.23 | 61.63 |
| CDY29435 | Canola | plastid | 60.8 | 60.11 |
| CDY19631 | Canola | plastid | 60.23 | 59.89 |
| Bra035772.1-P | Field mustard | plastid | 60.23 | 59.89 |
| PGSC0003DMT400037299 | Potato | plastid | 58.52 | 59.88 |
| Solyc10g006370.2.1 | Tomato | plastid | 57.95 | 59.3 |
| CDY29612 | Canola | plastid | 59.09 | 59.09 |
| Bra030468.1-P | Field mustard | plastid | 59.09 | 59.09 |
| CDY07336 | Canola | plastid | 55.68 | 59.04 |
| KRG98845 | Soybean | plastid | 59.09 | 58.76 |
| KRH46109 | Soybean | plastid | 60.23 | 58.56 |
| CDY25188 | Canola | plastid | 57.95 | 57.95 |
| Bra018876.1-P | Field mustard | plastid | 57.95 | 57.95 |
| VIT_19s0177g00330.t01 | Wine grape | cytosol | 30.68 | 56.84 |
| AT1G50900.1 | Thale cress | plastid | 56.25 | 56.57 |
| CDY25178 | Canola | plastid | 56.82 | 56.5 |
| GSMUA_Achr9P30190_001 | Banana | plastid | 55.11 | 54.19 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G226700.1 | EnsemblPlantsGene:TraesCS2D01G226700 | Gene3D:1.25.40.20 | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | InterPro:IPR020683 |
| InterPro:IPR036770 | PFscan:PS50297 | SUPFAM:SSF48403 | TIGR:cd00204 | MapMan:23.1.7.1 | : |
Description
No Description!
Coordinates
chr2D:-:194763312..194763919
Molecular Weight (calculated)
18847.4 Da
IEP (calculated)
5.984
GRAVY (calculated)
-0.265
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MASIPCTIQL ATKTASSSSG WRSPRAAQGG LRTPQLGGGA AWLRPSLLSK VAPARESGRV GFFKFGNKDA EGAGIYGSQA RDDFDRDDVE QYFNYMGMLA
101: VEGTYDKMEA LLNQSIHPVD ILLILAASEG DLPKIEELLK AGAKYDVKDA DGRTALDRAS GEVREFITGF AVAKKA
101: VEGTYDKMEA LLNQSIHPVD ILLILAASEG DLPKIEELLK AGAKYDVKDA DGRTALDRAS GEVREFITGF AVAKKA
001: MASSSISFSC APSLATSLFS TTSSSPRLLS SRFLGTRNLK LRIRPARLGP SNGSRTTCWF KFGKNGVDAE NAGIYGSQSR DDFDRDDVEQ YFNYMGMLAV
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA
Arabidopsis Description
LTDProtein LHCP TRANSLOCATION DEFECT [Source:UniProtKB/Swiss-Prot;Acc:Q8VY88]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.