CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021645_P001	Maize	plastid	88.04	87.1
Os07t0520800-01	Rice	plasma membrane, plastid	71.74	80.0
TraesCS2A01G221000.1	Wheat	plastid	68.48	71.59
TraesCS2D01G226700.1	Wheat	plastid	68.48	71.59
TraesCS2B01G246600.1	Wheat	plastid	67.39	70.45
GSMUA_Achr6P29360_001	Banana	plastid	62.5	66.47
GSMUA_Achr9P11670_001	Banana	plastid	63.59	65.73
VIT_19s0177g00340.t01	Wine grape	plastid	60.87	65.12
CDY19631	Canola	plastid	58.7	61.02
Bra035772.1-P	Field mustard	plastid	58.7	61.02
CDY07336	Canola	plastid	54.89	60.84
CDY29435	Canola	plastid	58.7	60.67
PGSC0003DMT400037299	Potato	plastid	56.52	60.47
Solyc10g006370.2.1	Tomato	plastid	56.52	60.47
KRG98845	Soybean	plastid	58.15	60.45
CDY29612	Canola	plastid	57.61	60.23
Bra030468.1-P	Field mustard	plastid	57.61	60.23
KRH46109	Soybean	plastid	59.24	60.22
Bra018876.1-P	Field mustard	plastid	57.07	59.66
CDY25188	Canola	plastid	57.07	59.66
VIT_19s0177g00330.t01	Wine grape	cytosol	30.43	58.95
CDY25178	Canola	plastid	56.52	58.76
AT1G50900.1	Thale cress	plastid	54.89	57.71
GSMUA_Achr9P30190_001	Banana	plastid	51.63	53.07

Protein Annotations

Gene3D:1.25.40.20	MapMan:23.1.7.1	EntrezGene:8080135	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	UniProt:C5XA34
EnsemblPlants:EER97310	ProteinID:EER97310	ProteinID:EER97310.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009536	GO:GO:0009570
GO:GO:0009628	GO:GO:0009941	GO:GO:0009987	GO:GO:0016043	GO:GO:0080167	GO:GO:0090391
InterPro:IPR020683	InterPro:IPR036770	PFscan:PS50297	EnsemblPlantsGene:SORBI_3002G320700	SUPFAM:SSF48403	UniParc:UPI0001A8355C
RefSeq:XP_002460789.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:69217722..69224768

Molecular Weight (calculated)

20052.0 Da

IEP (calculated)

9.133

GRAVY (calculated)

-0.290

Length

184 amino acids

Sequence
(BLAST)

001: MASIPCTFQL STAVSRRVSP RAAAQGKGQG VAGLRTPLVG AGRRGLGWLR PSRLSRVVPA SESGRVGPTC WFKFGNKDAE GAGIYGSQAR DDFDRDDVEQ
101: YFNYMGMLAV EGTYDKMEAL LNQKIHPVDI LLMLAASEGD RPKIEELLRA GAKFDVKDVD GRTALDRATD EIREFILGFA AKKV

Best Arabidopsis Sequence Match ( AT1G50900.1 )
(BLAST)

001: MASSSISFSC APSLATSLFS TTSSSPRLLS SRFLGTRNLK LRIRPARLGP SNGSRTTCWF KFGKNGVDAE NAGIYGSQSR DDFDRDDVEQ YFNYMGMLAV
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA

Arabidopsis Description

LTDProtein LHCP TRANSLOCATION DEFECT [Source:UniProtKB/Swiss-Prot;Acc:Q8VY88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.