Factsheet for Zm00001d021645_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97310	Sorghum	plastid	87.1	88.04
Os07t0520800-01	Rice	plasma membrane, plastid	72.04	81.21
TraesCS2A01G221000.1	Wheat	plastid	67.74	71.59
TraesCS2D01G226700.1	Wheat	plastid	66.67	70.45
TraesCS2B01G246600.1	Wheat	plastid	64.52	68.18
VIT_19s0177g00340.t01	Wine grape	plastid	61.83	66.86
GSMUA_Achr6P29360_001	Banana	plastid	61.83	66.47
GSMUA_Achr9P11670_001	Banana	plastid	61.83	64.61
CDY19631	Canola	plastid	58.6	61.58
Bra035772.1-P	Field mustard	plastid	58.6	61.58
CDY29435	Canola	plastid	58.6	61.24
PGSC0003DMT400037299	Potato	plastid	56.45	61.05
Solyc10g006370.2.1	Tomato	plastid	56.45	61.05
KRG98845	Soybean	plastid	57.53	60.45
CDY07336	Canola	plastid	53.76	60.24
CDY25188	Canola	plastid	56.99	60.23
Bra018876.1-P	Field mustard	plastid	56.99	60.23
KRH46109	Soybean	plastid	58.6	60.22
CDY29612	Canola	plastid	56.45	59.66
Bra030468.1-P	Field mustard	plastid	56.45	59.66
CDY25178	Canola	plastid	56.45	59.32
VIT_19s0177g00330.t01	Wine grape	cytosol	30.11	58.95
AT1G50900.1	Thale cress	plastid	54.84	58.29
GSMUA_Achr9P30190_001	Banana	plastid	50.0	51.96

Protein Annotations

EMBL:BT062855	EMBL:EU969104	EnsemblPlants:Zm00001d021645_P001	EnsemblPlants:Zm00001d021645_T001	EnsemblPlantsGene:Zm00001d021645	EntrezGene:100277526
Gene3D:1.25.40.20	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:IPR020683	InterPro:IPR036770	PFscan:PS50297
ProteinID:ONM57803.1	SEG:seg	SUPFAM:SSF48403	UniParc:UPI000182D2BA	UniProt:B6TVT9	MapMan:23.1.7.1

Description

Protein LHCP TRANSLOCATION DEFECT

Coordinates

chr7:+:158959004..158960016

Molecular Weight (calculated)

20155.0 Da

IEP (calculated)

8.200

GRAVY (calculated)

-0.351

Length

186 amino acids

Sequence
(BLAST)

001: MASIPCTFQL STAASRRVSP RVAAQGRGQG GGGAVLRTPL LGAGRRGLGW LRPSRLSRVV PASESGRAGP TCWFKFGNKD AEGAGIYGSQ ARDDFDRDDV
101: EQYFNYMGML AVEGTYDKME ALLNQDIHPV DILLMLAASE GDRPKIEELL RAGARFDVKD VDGRTALDRA TDETREFILG FAAKKA

Best Arabidopsis Sequence Match ( AT1G50900.1 )
(BLAST)

001: MASSSISFSC APSLATSLFS TTSSSPRLLS SRFLGTRNLK LRIRPARLGP SNGSRTTCWF KFGKNGVDAE NAGIYGSQSR DDFDRDDVEQ YFNYMGMLAV
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA

Arabidopsis Description

LTDProtein LHCP TRANSLOCATION DEFECT [Source:UniProtKB/Swiss-Prot;Acc:Q8VY88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.