Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P11670_001 | Banana | plastid | 62.01 | 62.36 |
| GSMUA_Achr6P29360_001 | Banana | plastid | 59.78 | 61.85 |
| VIT_19s0177g00340.t01 | Wine grape | plastid | 56.98 | 59.3 |
| KRH46109 | Soybean | plastid | 56.42 | 55.8 |
| CDY29435 | Canola | plastid | 55.31 | 55.62 |
| KRG98845 | Soybean | plastid | 54.75 | 55.37 |
| TraesCS2D01G226700.1 | Wheat | plastid | 54.19 | 55.11 |
| CDY07336 | Canola | plastid | 50.84 | 54.82 |
| Bra035772.1-P | Field mustard | plastid | 54.19 | 54.8 |
| CDY19631 | Canola | plastid | 54.19 | 54.8 |
| TraesCS2B01G246600.1 | Wheat | plastid | 53.63 | 54.55 |
| TraesCS2A01G221000.1 | Wheat | plastid | 53.63 | 54.55 |
| Bra030468.1-P | Field mustard | plastid | 53.07 | 53.98 |
| CDY29612 | Canola | plastid | 53.07 | 53.98 |
| VIT_19s0177g00330.t01 | Wine grape | cytosol | 28.49 | 53.68 |
| Bra018876.1-P | Field mustard | plastid | 51.96 | 52.84 |
| CDY25188 | Canola | plastid | 51.96 | 52.84 |
| Solyc10g006370.2.1 | Tomato | plastid | 50.28 | 52.33 |
| Os07t0520800-01 | Rice | plasma membrane, plastid | 48.04 | 52.12 |
| AT1G50900.1 | Thale cress | plastid | 50.84 | 52.0 |
| CDY25178 | Canola | plastid | 51.4 | 51.98 |
| EER97310 | Sorghum | plastid | 53.07 | 51.63 |
| PGSC0003DMT400037299 | Potato | plastid | 49.16 | 51.16 |
| Zm00001d021645_P001 | Maize | plastid | 51.96 | 50.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P30190_001 | EnsemblPlants:GSMUA_Achr9T30190_001 | EnsemblPlantsGene:GSMUA_Achr9G30190_001 | Gene3D:1.25.40.20 | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf |
| InterPro:IPR020683 | InterPro:IPR036770 | PFscan:PS50297 | SEG:seg | SUPFAM:SSF48403 | UniParc:UPI000294EC8C |
| UniProt:M0U4S6 | MapMan:23.1.7.1 | : | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G30190_001]
Coordinates
chr9:-:33562128..33562733
Molecular Weight (calculated)
19415.1 Da
IEP (calculated)
6.272
GRAVY (calculated)
-0.293
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MASIPCSIYL YPSSSLGTTN SSSSSSTALR SVERPRSPFL AIRRSLGWLM ASRLRAKVGP CDAGSGTATG VDAEGAGIYG SQSRDDFSRY DVEQYFEHMG
101: MLAAEGSHDK MEALLDQKIH PVDILLMAAA SEGDKPKMEE LLRAGAKYDV RDGEGRIALE RAASDEIKQL ILQLSVRRL
101: MLAAEGSHDK MEALLDQKIH PVDILLMAAA SEGDKPKMEE LLRAGAKYDV RDGEGRIALE RAASDEIKQL ILQLSVRRL
001: MASSSISFSC APSLATSLFS TTSSSPRLLS SRFLGTRNLK LRIRPARLGP SNGSRTTCWF KFGKNGVDAE NAGIYGSQSR DDFDRDDVEQ YFNYMGMLAV
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA
Arabidopsis Description
LTDProtein LHCP TRANSLOCATION DEFECT [Source:UniProtKB/Swiss-Prot;Acc:Q8VY88]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.