Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- peroxisome 1
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_19s0177g00340.t01 | Wine grape | plastid | 68.42 | 37.79 |
| Os07t0520800-01 | Rice | plasma membrane, plastid | 61.05 | 35.15 |
| Solyc10g006370.2.1 | Tomato | plastid | 63.16 | 34.88 |
| PGSC0003DMT400037299 | Potato | plastid | 62.11 | 34.3 |
| Bra035772.1-P | Field mustard | plastid | 62.11 | 33.33 |
| CDY19631 | Canola | plastid | 62.11 | 33.33 |
| CDY29435 | Canola | plastid | 62.11 | 33.15 |
| KRG98845 | Soybean | plastid | 61.05 | 32.77 |
| KRH46109 | Soybean | plastid | 62.11 | 32.6 |
| GSMUA_Achr9P11670_001 | Banana | plastid | 61.05 | 32.58 |
| CDY07336 | Canola | plastid | 56.84 | 32.53 |
| Bra030468.1-P | Field mustard | plastid | 58.95 | 31.82 |
| CDY29612 | Canola | plastid | 58.95 | 31.82 |
| GSMUA_Achr6P29360_001 | Banana | plastid | 57.89 | 31.79 |
| Bra018876.1-P | Field mustard | plastid | 57.89 | 31.25 |
| CDY25188 | Canola | plastid | 57.89 | 31.25 |
| TraesCS2A01G221000.1 | Wheat | plastid | 56.84 | 30.68 |
| TraesCS2B01G246600.1 | Wheat | plastid | 56.84 | 30.68 |
| TraesCS2D01G226700.1 | Wheat | plastid | 56.84 | 30.68 |
| CDY25178 | Canola | plastid | 56.84 | 30.51 |
| EER97310 | Sorghum | plastid | 58.95 | 30.43 |
| Zm00001d021645_P001 | Maize | plastid | 58.95 | 30.11 |
| AT1G50900.1 | Thale cress | plastid | 53.68 | 29.14 |
| GSMUA_Achr9P30190_001 | Banana | plastid | 53.68 | 28.49 |
Protein Annotations
| Gene3D:1.25.40.20 | EntrezGene:100855132 | wikigene:100855132 | MapMan:23.1.7.1 | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf |
| ProteinID:CCB48811 | ProteinID:CCB48811.1 | UniProt:F6H9B8 | EMBL:FN595498 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009536 | GO:GO:0009570 | InterPro:IPR020683 | InterPro:IPR036770 |
| EntrezGene:LOC100855132 | wikigene:LOC100855132 | PFscan:PS50297 | SUPFAM:SSF48403 | UniParc:UPI000210A3BB | ArrayExpress:VIT_19s0177g00330 |
| EnsemblPlantsGene:VIT_19s0177g00330 | EnsemblPlants:VIT_19s0177g00330.t01 | RefSeq:XP_003634712 | RefSeq:XP_003634712.1 | : | : |
Description
No Description!
Coordinates
chr19:-:6178875..6179177
Molecular Weight (calculated)
10350.7 Da
IEP (calculated)
5.066
GRAVY (calculated)
0.053
Length
95 amino acids
Sequence
(BLAST)
(BLAST)
1: MGMLAVEGTY DKMKALLSQN IYPVDILLMM AASEGDKPKI EELLRAGASY TVKGAGGWTA LERAANDDGM FESFILLGCL KRPQSAIHFL ELTKP
001: MASSSISFSC APSLATSLFS TTSSSPRLLS SRFLGTRNLK LRIRPARLGP SNGSRTTCWF KFGKNGVDAE NAGIYGSQSR DDFDRDDVEQ YFNYMGMLAV
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA
Arabidopsis Description
LTDProtein LHCP TRANSLOCATION DEFECT [Source:UniProtKB/Swiss-Prot;Acc:Q8VY88]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.