Factsheet for AT3G25790.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13584	Canola	nucleus	76.19	76.19
CDX83554	Canola	nucleus	73.95	74.58
CDY39188	Canola	nucleus	71.43	73.28
Bra025161.1-P	Field mustard	nucleus	76.75	72.49
CDY04180	Canola	nucleus	67.23	71.22
Bra017349.1-P	Field mustard	nucleus	68.63	68.44
AT1G13300.1	Thale cress	nucleus	57.98	60.17
VIT_01s0011g03110.t01	Wine grape	nucleus	46.22	46.35
AT1G68670.1	Thale cress	nucleus	44.82	45.2
PGSC0003DMT400002162	Potato	nucleus	46.5	44.15
AT1G25550.1	Thale cress	nucleus	42.3	43.9
Solyc05g009720.2.1	Tomato	nucleus	47.34	42.25
GSMUA_Achr11P...	Banana	nucleus	40.9	39.57
GSMUA_Achr10P...	Banana	nucleus	32.77	37.74
GSMUA_Achr6P09870_001	Banana	nucleus	35.01	36.76
GSMUA_Achr1P23220_001	Banana	nucleus	26.61	35.85
GSMUA_Achr3P21090_001	Banana	nucleus	36.69	35.12
GSMUA_Achr8P18270_001	Banana	nucleus	36.41	35.04
Os02t0325600-01	Rice	nucleus	37.82	32.77
TraesCS2D01G119100.1	Wheat	nucleus	36.69	32.59
GSMUA_Achr4P03680_001	Banana	nucleus	27.45	31.82
TraesCS2B01G135600.1	Wheat	nucleus	29.97	30.57
EES15678	Sorghum	nucleus	36.97	28.57
TraesCS2A01G116100.2	Wheat	plastid	36.41	27.37
Zm00001d023402_P001	Maize	nucleus	35.01	27.23
Zm00001d023411_P001	Maize	nucleus	34.45	27.15
AT1G49560.1	Thale cress	nucleus	25.21	27.03
AT4G37180.2	Thale cress	nucleus	27.17	26.72
GSMUA_Achr4P13650_001	Banana	plastid	12.04	26.06
HORVU2Hr1G020140.3	Barley	nucleus, plastid	36.69	25.34
AT2G03500.1	Thale cress	nucleus	27.17	22.45

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EntrezGene:822170	ProteinID:AEE77068.1	ArrayExpress:AT3G25790	EnsemblPlantsGene:AT3G25790
RefSeq:AT3G25790	TAIR:AT3G25790	RefSeq:AT3G25790-TAIR-G	EnsemblPlants:AT3G25790.1	TAIR:AT3G25790.1	EMBL:AY085570
ProteinID:BAA95766.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006950	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009605	GO:GO:0009987	GO:GO:0009991	GO:GO:0016036	GO:GO:0090548	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	RefSeq:NP_566778.1	PFAM:PF00249	PO:PO:0009005
PO:PO:0020100	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF16	UniProt:Q9LS00	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000009D1B1	SEG:seg	:	:

Description

HHO1Transcription factor HHO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS00]

Coordinates

chr3:+:9413052..9415240

Molecular Weight (calculated)

40372.0 Da

IEP (calculated)

7.753

GRAVY (calculated)

-0.954

Length

357 amino acids

Sequence
(BLAST)

001: MIKNLSNMKN DNQKREKCCE YIEALEEERR KINVFQRELP LCVELVTQAI EAYKREISGT STDNLYGQSE CSEQTTGECG RILDLFIPIK HSSTSIEEEV
101: DDKDDDDEEH QSHETDIDFD DKNMKSEWLK SVQLWNQSDA VVSNNRQDRS QEKTETLVEL IKINDEAAKK NNNIKSPVTT SDGGSGGGGG RRGQRKNRRC
201: WSQELHRRFL NALKQLGGPH VATPKQIRDI MKVDGLTNDE VKSHLQKYRL HARRPSQTTP NNRNSQTQHF VVVGGIWVPQ TNHSTANAVN AVASGETTGI
301: YGPMVSSLPS EWPRHSNFGR KISEDRSRCS NNGFFRCSSP AMSCSTRTKT KDAKIIS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.