CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51540	Canola	nucleus	93.98	91.23
Bra040595.1-P	Field mustard	cytosol	75.1	87.18
AT2G04500.1	Thale cress	cytosol	60.04	60.4
AT4G14980.1	Thale cress	cytosol	65.26	59.63
AT5G44770.1	Thale cress	cytosol, nucleus, peroxisome	64.66	59.52
AT5G54030.1	Thale cress	cytosol	45.98	54.65
AT5G54050.1	Thale cress	nucleus	63.25	54.31
AT5G54040.1	Thale cress	cytosol	64.46	53.86
AT5G54020.2	Thale cress	nucleus	62.85	53.23
AT5G29624.1	Thale cress	cytosol	51.2	52.25
CDX97701	Canola	cytosol	18.47	43.4
CDY30196	Canola	cytosol	31.53	38.39
CDY21921	Canola	plastid	28.51	37.37
CDY06776	Canola	cytosol	21.29	37.19
CDY41709	Canola	peroxisome	37.95	35.93
CDY29992	Canola	cytosol	18.88	35.88
CDY63456	Canola	cytosol	28.31	35.7
CDY63290	Canola	cytosol	35.94	35.66
CDY36839	Canola	cytosol	42.37	34.88
CDY46706	Canola	mitochondrion	36.95	34.52
CDY60784	Canola	cytosol	23.09	34.23
CDY52787	Canola	nucleus	42.97	33.91
CDY69979	Canola	nucleus	43.17	33.75
CDY48718	Canola	cytosol	25.1	33.69
CDY58516	Canola	nucleus	33.94	33.67
CDX74183	Canola	cytosol	23.09	33.43
CDY21132	Canola	cytosol	40.36	32.84
CDY22036	Canola	cytosol	38.96	32.55
CDY27940	Canola	cytosol	36.35	32.09
CDY29993	Canola	cytosol	39.56	31.93
CDY65338	Canola	cytosol	42.37	31.49
CDY52927	Canola	cytosol	23.29	30.77
CDY44167	Canola	cytosol	29.72	30.08
CDY44574	Canola	cytosol	28.92	29.88
CDY22034	Canola	endoplasmic reticulum	37.55	29.73
CDY64703	Canola	cytosol	39.56	29.67
CDX88733	Canola	cytosol	37.15	29.65
CDX93183	Canola	cytosol	39.56	29.58
CDX71062	Canola	cytosol	36.55	29.07
CDY30007	Canola	cytosol, nucleus, plastid	38.35	28.72
CDX67463	Canola	cytosol	26.71	28.66
CDY52789	Canola	cytosol	22.49	27.59
CDY22883	Canola	cytosol	36.14	27.57
CDY36353	Canola	plastid	17.27	27.56
CDY27938	Canola	cytosol	24.3	27.56
CDY09240	Canola	cytosol	25.3	26.53
CDY09238	Canola	cytosol	25.3	26.53
CDY63460	Canola	cytosol, mitochondrion	21.69	25.96
CDY43524	Canola	cytosol	25.9	25.49
CDY40661	Canola	cytosol	38.96	25.46
CDY42579	Canola	nucleus	13.86	25.18
CDY50383	Canola	cytosol	42.57	25.15
CDX74184	Canola	plasma membrane	20.08	24.39
CDY22052	Canola	nucleus	30.12	23.7
CDY22035	Canola	cytosol	40.96	23.02
CDY50382	Canola	cytosol	40.96	20.56
KRG95394	Soybean	nucleus	23.09	20.28
CDX82703	Canola	cytosol	39.16	20.21
KRH67075	Soybean	nucleus	22.29	19.47

Protein Annotations

EnsemblPlants:CDY28703	EnsemblPlantsGene:GSBRNA2T00041340001	Gene3D:3.30.60.20	GO:A0A078GVL6	GO:GO:0003674	GO:GO:0003824
GO:GO:0047134	InterPro:DC1	PFAM:PF03107	ProteinID:CDY28703	ProteinID:CDY28703.1	SEG:seg
SUPFAM:SSF57889	UniParc:UPI0004EE7DE9	UniProt:A0A078GVL6	MapMan:35.2	:	:

Description

BnaCnng05890DBnaCnng05890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVL6]

Coordinates

chrLK032225:-:300500..302095

Molecular Weight (calculated)

57219.3 Da

IEP (calculated)

6.436

GRAVY (calculated)

-0.306

Length

498 amino acids

Sequence
(BLAST)

001: MPKSKHMLPF HDHPLYIFDD DQSWLCYICS TNEKRGLVYI CMECELVTHK ECVEPFLNNP FQCNHFLKFF TGSPFKSENQ HCHFCRKNLS SLYARCTICN
101: TSMDVDCLKN PPPLTIFQPK HHEHSLTLLS RLVTFTCNAC GLEGDHCIDL PRVISINRHD HRISHTFHLG QGERDWECGV CRKTIDWVYG AYKCSRCPNY
201: AVHSKCATRS EVWDGIELED VPDEDEEIED PYKVVNEQDI IHFSHENHIL RLDESCVKDM RCEGCVLHIN GEPCYRCVEC DFILHKTCAS LPRKKRHLLH
301: NHKLTLLVDE VTFQCRACKI NSNGFSSVSE PFRHDLHPHP LYWTLEGSKE CHACDTETKN PLCCTVCDDY ALCMRCTTLP RKVKHRCDDH LLSLSQGVGN
401: ASGDLWCDVC ECKVIASECY YTCQECGVSL DIDCVLGDFY YLKVGLIGPG LEVLANNGVT RPLCSGCEVR CKFPFLARDT TTQEPVCYFC NINCLHYH

Best Arabidopsis Sequence Match ( AT5G44770.1 )
(BLAST)

001: MSKLMLPFHE HPMTISNLYN HACDFCPGRP KPGTIFFCEK CDLDLHKGCA GKFLNNSSRC NHSLKIFQGR FGQFGEDDDY QCHYCQQNVG FHFARCTICN
101: ISIDEKCLRN PPPLTIFQPK HHKHSLFLLG RLVAFTCNAC GVEGDRNPYI CIECNLMLHK ECTDLPRVIS INRHEHRISH TFHLGKGEGV WECGVCRKTI
201: DCVYGAFICS RCPSSYAVHS RCATRKEVWD GIELEDVPEE DEELEDPFKV INEKGDIVHF SHEEHVLRLD VNYVHDNDTM CCGGCILPIN DDPCYKCVEC
301: DFCLHKGCAS LPRKKAHFLH NHKISLRAHK DDVYVDKCGA CKTYSNGFKY ECHDKSSCRG NIKYDIRCSS ISEPFHHDDL HPHPLYWTLE ETKQCKACGT
401: EILKPLSCLV CEYALCIRCA TLPKKVKHRC DDHFLSLCHD AGNSSGDLWC DICETKTDPS VCYYTCDKCG VSLHINCVLG DLYYTKVGLV YPGLEVLPNN
501: GATRPFCNSC KVRCKFSFLM KQTLGDLVRY FCSIRCIPRA R

Arabidopsis Description

CHP-rich zinc finger protein-like [Source:UniProtKB/TrEMBL;Acc:O48583]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.