CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36353	Canola	plastid	38.32	33.65
CDX97701	Canola	cytosol	20.44	26.42
CDY06776	Canola	cytosol	24.09	23.16
CDY52789	Canola	cytosol	32.48	21.92
CDY63460	Canola	cytosol, mitochondrion	31.75	20.91
CDY29992	Canola	cytosol	19.71	20.61
CDY52927	Canola	cytosol	26.28	19.1
CDX74184	Canola	plasma membrane	28.47	19.02
CDY63456	Canola	cytosol	25.91	17.97
CDY46706	Canola	mitochondrion	33.94	17.45
CDX67463	Canola	cytosol	28.83	17.03
CDY43524	Canola	cytosol	31.02	16.8
CDY36839	Canola	cytosol	36.86	16.69
CDY58516	Canola	nucleus	30.29	16.53
CDY48718	Canola	cytosol	21.17	15.63
CDY51540	Canola	nucleus	28.47	15.2
CDX74183	Canola	cytosol	18.98	15.12
CDY27940	Canola	cytosol	31.02	15.07
CDY41709	Canola	peroxisome	28.47	14.83
CDY09240	Canola	cytosol	25.18	14.53
CDY09238	Canola	cytosol	25.18	14.53
CDY52787	Canola	nucleus	32.85	14.26
CDY44574	Canola	cytosol	24.82	14.11
CDY69979	Canola	nucleus	32.48	13.97
CDY28703	Canola	cytosol	25.18	13.86
CDY22036	Canola	cytosol	29.93	13.76
CDX88733	Canola	cytosol	31.02	13.62
CDX71062	Canola	cytosol	31.02	13.58
CDY21921	Canola	plastid	18.61	13.42
CDY22034	Canola	endoplasmic reticulum	30.66	13.35
CDY65338	Canola	cytosol	32.48	13.28
CDY64703	Canola	cytosol	31.75	13.1
CDY22052	Canola	nucleus	29.56	12.8
CDY30007	Canola	cytosol, nucleus, plastid	31.02	12.78
CDX93183	Canola	cytosol	31.02	12.76
CDY63290	Canola	cytosol	22.99	12.55
CDY22883	Canola	cytosol	28.83	12.1
CDY30196	Canola	cytosol	17.88	11.98
CDY40661	Canola	cytosol	32.48	11.68
CDY27938	Canola	cytosol	18.25	11.39
CDY21132	Canola	cytosol	24.09	10.78
CDY29993	Canola	cytosol	23.36	10.37
CDY22035	Canola	cytosol	33.21	10.27
CDY50383	Canola	cytosol	31.02	10.08
CDY44167	Canola	cytosol	16.79	9.35
CDX82703	Canola	cytosol	31.02	8.81
KRH67075	Soybean	nucleus	18.25	8.77
KRG95394	Soybean	nucleus	17.88	8.64
CDY50382	Canola	cytosol	31.02	8.57
CDY60784	Canola	cytosol	7.66	6.25

Protein Annotations

EnsemblPlants:CDY42579	EnsemblPlantsGene:GSBRNA2T00075077001	Gene3D:3.30.40.10	GO:A0A078HZ39	GO:GO:0003674	GO:GO:0003824
GO:GO:0047134	InterPro:DC1	InterPro:IPR013083	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR32410	PFAM:PF03107
ProteinID:CDY42579	ProteinID:CDY42579.1	SUPFAM:SSF57889	UniParc:UPI0004EF49AC	UniProt:A0A078HZ39	MapMan:35.2

Description

BnaA04g10340DBnaA04g10340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZ39]

Coordinates

chrLK032529:-:184962..186522

Molecular Weight (calculated)

31666.0 Da

IEP (calculated)

6.537

GRAVY (calculated)

-0.406

Length

274 amino acids

Sequence
(BLAST)

001: MSRVLHLSSP YDHLISQKFP IHDHPLYSTT DHGQCAGCYE GKELSAEFLE CPECDIFFHK ECIELSPEVI THSFHPQNGC MCCSLCGEQL MLLVYRCLIC
101: DFKLDMSCAK NPPLLEIDQP KVDQHKLHLL MKKVSFTCDA CGFEGDRSPY MCLPCNFMYH IRCVYFPDDS QQRSYSLSPR TWSCGCRYVH SDVVACEKIK
201: KTRELENKPS KGDDDDDYPF KIVEDKYIDH FTHEHYLAFH KDGKVSDVIM SKGGDKYLCS SSCLMRNRHL LKNL

Best Arabidopsis Sequence Match ( AT5G40320.1 )
(BLAST)

001: MVLVEELSDV SSPTNEANQA YSYDDDDDDD GSLTPSMVFD QIMGTSLMLP FHEHPVYNHY SSTGQCDGCP ELRENGLHGY NCNTCGLTVH KECAESSPEI
101: NHPSHQRHPL MLLTHGLPQE AEDDKCRLCG EKVGKLVYHC SICDFSLDLF CARNPLSLVV YFRKGHEHTL TLMPRLIRFT CNACGLESDR SPYICAQCDF
201: MIHEDCIYLP RVISIIRHEH RISRTYFLGS GDWKCGVCRR RMDGRYGAYS CSICPDYAVH SRCATRRDVW DGLELEDEPE DIEECEEPFR VVSDGVINHF
301: SHREHDLRLE DGLTNRHDEN IRCRACVRPV YANTFYSCMQ CDDFILHETC ANLPRKKRHV LHNHQLTLYP DDNIVMDFPM LRGVFLCTAC RRLCSGFRYE
401: CCNIKLDVRC GSISEPFFYE CHPHPLFQTS LDSKVCETCK EESDYVLTCM DCDYVLDFEC ATLPPTVRYK YDRHPLKLCY DGDKDMAGSY WCEICEKEMD
501: QNIIFYTCES SGPTIHIECV LGDFRYVKPR LHFEFNKKKW EVALNGINRP GCYKCGFRCK GPFVAVSVDY DISYVCSLLC LWKGETLVYG SIRD

Arabidopsis Description

CHP-rich zinc finger protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FNE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.