Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX97701 | Canola | cytosol | 39.66 | 75.94 |
AT4G01925.1 | Thale cress | cytosol | 48.28 | 70.0 |
CDY52787 | Canola | nucleus | 75.12 | 48.34 |
CDY69979 | Canola | nucleus | 73.89 | 47.1 |
CDY65338 | Canola | cytosol | 77.59 | 47.01 |
CDY22036 | Canola | cytosol | 65.27 | 44.46 |
CDY22034 | Canola | endoplasmic reticulum | 67.24 | 43.4 |
CDY22052 | Canola | nucleus | 67.24 | 43.13 |
AT4G01930.1 | Thale cress | cytosol | 67.98 | 42.33 |
AT4G01740.1 | Thale cress | cytosol | 67.73 | 42.18 |
AT4G01910.1 | Thale cress | cytosol | 67.24 | 41.94 |
CDY29992 | Canola | cytosol | 26.85 | 41.6 |
CDY06776 | Canola | cytosol | 28.82 | 41.05 |
AT4G01920.1 | Thale cress | cytosol | 66.5 | 41.03 |
AT4G02190.1 | Thale cress | cytosol | 65.27 | 40.21 |
CDY63460 | Canola | cytosol, mitochondrion | 40.89 | 39.9 |
CDY21921 | Canola | plastid | 37.19 | 39.74 |
AT4G01760.1 | Thale cress | cytosol | 65.27 | 39.73 |
AT4G11550.1 | Thale cress | cytosol | 63.55 | 38.62 |
AT4G11540.1 | Thale cress | cytosol | 49.75 | 38.48 |
CDY48718 | Canola | cytosol | 34.73 | 38.01 |
CDY52927 | Canola | cytosol | 34.48 | 37.14 |
CDX74184 | Canola | plasma membrane | 36.21 | 35.85 |
CDY50383 | Canola | cytosol | 73.65 | 35.47 |
CDY22035 | Canola | cytosol | 76.35 | 34.99 |
CDY42579 | Canola | nucleus | 21.92 | 32.48 |
CDX74183 | Canola | cytosol | 25.86 | 30.52 |
CDY09238 | Canola | cytosol | 34.98 | 29.89 |
CDY09240 | Canola | cytosol | 34.98 | 29.89 |
CDX67463 | Canola | cytosol | 33.25 | 29.09 |
CDY50382 | Canola | cytosol | 70.2 | 28.73 |
AT4G02180.1 | Thale cress | cytosol | 68.97 | 28.31 |
CDY63456 | Canola | cytosol | 26.85 | 27.59 |
AT4G11390.2 | Thale cress | cytosol | 36.95 | 27.47 |
CDY46706 | Canola | mitochondrion | 35.22 | 26.83 |
CDY43524 | Canola | cytosol | 32.51 | 26.09 |
CDX93183 | Canola | cytosol | 42.61 | 25.98 |
CDY41709 | Canola | peroxisome | 31.77 | 24.52 |
CDY27940 | Canola | cytosol | 33.5 | 24.11 |
CDY51540 | Canola | nucleus | 30.3 | 23.98 |
CDY30007 | Canola | cytosol, nucleus, plastid | 39.16 | 23.91 |
CDX88733 | Canola | cytosol | 36.45 | 23.72 |
CDY64703 | Canola | cytosol | 38.67 | 23.64 |
CDX71062 | Canola | cytosol | 36.45 | 23.64 |
CDY36839 | Canola | cytosol | 35.22 | 23.64 |
CDY30196 | Canola | cytosol | 22.91 | 22.74 |
CDY28703 | Canola | cytosol | 27.59 | 22.49 |
CDY22883 | Canola | cytosol | 35.22 | 21.9 |
CDY29993 | Canola | cytosol | 33.25 | 21.88 |
Bra036288.1-P | Field mustard | cytosol, nucleus, plasma membrane | 89.9 | 21.82 |
CDY21132 | Canola | cytosol | 32.76 | 21.73 |
CDY58516 | Canola | nucleus | 26.85 | 21.71 |
CDY40661 | Canola | cytosol | 38.92 | 20.73 |
CDY63290 | Canola | cytosol | 25.37 | 20.52 |
CDX82703 | Canola | cytosol | 44.58 | 18.76 |
CDY44167 | Canola | cytosol | 22.66 | 18.7 |
CDY27938 | Canola | cytosol | 20.2 | 18.68 |
CDY44574 | Canola | cytosol | 17.73 | 14.94 |
KRG95394 | Soybean | nucleus | 18.97 | 13.58 |
KRH67075 | Soybean | nucleus | 18.47 | 13.16 |
CDY36353 | Canola | plastid | 9.85 | 12.82 |
CDY60784 | Canola | cytosol | 10.59 | 12.8 |
Protein Annotations
EnsemblPlants:CDY52789 | EnsemblPlantsGene:GSBRNA2T00007846001 | Gene3D:3.30.60.20 | GO:A0A078ITM7 | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0047134 | InterPro:DC1 | PFAM:PF03107 | ProteinID:CDY52789 | ProteinID:CDY52789.1 | SEG:seg |
SUPFAM:SSF57889 | UniParc:UPI0004EEA27C | UniProt:A0A078ITM7 | MapMan:35.2 | : | : |
Description
BnaCnng23340DBnaCnng23340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITM7]
Coordinates
chrLK033130:-:74723..76786
Molecular Weight (calculated)
46514.6 Da
IEP (calculated)
7.336
GRAVY (calculated)
-0.365
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MESEGVSLPL IHEHPMKPWN DLRKGDCCGR FVSVSDGYYC KNCDIFVHKK CGDNLSEFIV HTSHPNHTLR IRFKIGFCIC RLCGRETWNT FYRCQVCDFK
101: VDLDCAKHPP PPVIETFETH SHELTFLKGL TEFYSFHVDC LNYSPEVSHS YHSLHPLKLL TGPPPDYSDG KCRLCENEVD EELFYHCSSC NFTLDMRCVL
201: NPPPRSLVDL KAHGHQLTLL PRLFSFSCNA CGLKGDRSPY MCVQCDFMIH QDCLGLPRVI NINRHDHRVS RTSVLGVVNS VCGVCRKKVD WTCGGFSCQR
301: CPGYVVHSKC ATRDDVWNGK ELEGIPEEEE DVEPYVVVDG NTIHHFSHKE HYLRRIHGNG VLYEDNKCRC KSRCMYPIKL KLLGTSGTYA CSYFCSSYLT
401: SRGLER
101: VDLDCAKHPP PPVIETFETH SHELTFLKGL TEFYSFHVDC LNYSPEVSHS YHSLHPLKLL TGPPPDYSDG KCRLCENEVD EELFYHCSSC NFTLDMRCVL
201: NPPPRSLVDL KAHGHQLTLL PRLFSFSCNA CGLKGDRSPY MCVQCDFMIH QDCLGLPRVI NINRHDHRVS RTSVLGVVNS VCGVCRKKVD WTCGGFSCQR
301: CPGYVVHSKC ATRDDVWNGK ELEGIPEEEE DVEPYVVVDG NTIHHFSHKE HYLRRIHGNG VLYEDNKCRC KSRCMYPIKL KLLGTSGTYA CSYFCSSYLT
401: SRGLER
001: MDSEGVLMPL IHKHRMMPWN DLRRGDCCGR FESICDGYYC KICDIFVHKK CGESSEYIEH PSHPNHTLQL LSTRGNSHDC DLCGKNIGDL FYRCEICDFD
101: MDLYCAKYPP PEVINISKTH HHKLNLLKEL IQFDYCVWHP PEVNHTLEVN HSYHSLHPLK LHTGQLPNYS DRKCRLCAKE IEVGLFYHCS LCNFTLDMSC
201: VLNPPQRYLW NLKAHDHQLT LLPSLRSFLC SACGLNGDRS PYICVQCDFM IHQVCLHLPR VININRHDHR VSRTSVLGVV NSVCGVCRQK VDWTCGGFSC
301: PRCPGYAAHS LCATREDVWN GKELEGVPEE IEDIEPYVVI DDNTIQHFSH KEHYLRLHVN SVLCDDNKRC SACTHPICLQ SFYGCMDCDF ILHQNCAGFL
401: RMKWHVLHNE RLTLVTNETE VFKCYACERW SNGFRYQQGY KSFDVRCGSI SEPFFHPSHP DHPLYCILPY GKIFCNGCYK FKYGMLVCVE YECNHLICFN
501: CATLPPVVKH RVDDHPLSLC YGEKASGICW CDICEAKADP EIWFYTCKDQ RASLHTSCVL GDFSGLMPGS TLKSASNSSE VLLNNIVSRP FCSFLELMPG
601: STLESAGKSV EVGLNKSTSR PFCISCKLHC IFPIILKRLG TSDEYFCSIL CI
101: MDLYCAKYPP PEVINISKTH HHKLNLLKEL IQFDYCVWHP PEVNHTLEVN HSYHSLHPLK LHTGQLPNYS DRKCRLCAKE IEVGLFYHCS LCNFTLDMSC
201: VLNPPQRYLW NLKAHDHQLT LLPSLRSFLC SACGLNGDRS PYICVQCDFM IHQVCLHLPR VININRHDHR VSRTSVLGVV NSVCGVCRQK VDWTCGGFSC
301: PRCPGYAAHS LCATREDVWN GKELEGVPEE IEDIEPYVVI DDNTIQHFSH KEHYLRLHVN SVLCDDNKRC SACTHPICLQ SFYGCMDCDF ILHQNCAGFL
401: RMKWHVLHNE RLTLVTNETE VFKCYACERW SNGFRYQQGY KSFDVRCGSI SEPFFHPSHP DHPLYCILPY GKIFCNGCYK FKYGMLVCVE YECNHLICFN
501: CATLPPVVKH RVDDHPLSLC YGEKASGICW CDICEAKADP EIWFYTCKDQ RASLHTSCVL GDFSGLMPGS TLKSASNSSE VLLNNIVSRP FCSFLELMPG
601: STLESAGKSV EVGLNKSTSR PFCISCKLHC IFPIILKRLG TSDEYFCSIL CI
Arabidopsis Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZSI9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.