Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • peroxisome 1
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX81261
CDX86029
CDX99153
CDY03408
CDY08844
CDY11652
CDY14517
CDY18692
CDY21814
CDY31298
CDY34322
CDY46357
CDY46828
CDY48156
CDY53953
CDY56082
CDY66333
CDY68857

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G01920.1 CDY11652 AT1G69810.1 21798944
AT4G01920.1 CDY56082 AT1G69810.1 21798944
AT4G01920.1 CDY68857 AT1G69810.1 21798944
AT4G01920.1 CDY46357 AT3G28715.1 21798944
AT4G01920.1 CDX86029 AT3G45640.1 21798944
AT4G01920.1 CDX99153 AT3G45640.1 21798944
AT4G01920.1 CDY21814 AT3G48210.1 21798944
AT4G01920.1 CDY48156 AT3G48210.1 21798944
AT4G01920.1 CDY53953 AT3G48210.1 21798944
AT4G01920.1 CDY66333 AT4G15700.1 21798944
AT4G01920.1 CDY03408 AT4G24900.1 21798944
AT4G01920.1 CDY34322 AT4G24900.1 21798944
AT4G01920.1 CDX81261 AT5G64850.1 21798944
AT4G01920.1 CDY08844 AT5G64850.1 21798944
AT4G01920.1 CDY14517 AT5G64850.1 21798944
AT4G01920.1 CDY18692 AT5G64850.1 21798944
AT4G01920.1 CDY31298 AT5G64850.1 21798944
AT4G01920.1 CDY46828 AT5G64850.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY65338 Canola cytosol 68.17 90.15
CDY22036 Canola cytosol 53.61 79.7
CDY69979 Canola nucleus 57.22 79.59
CDY52787 Canola nucleus 55.3 77.65
CDX97701 Canola cytosol 18.28 76.42
CDY52789 Canola cytosol 34.99 76.35
CDY21921 Canola plastid 29.91 69.74
AT4G01925.1 Thale cress cytosol 21.67 68.57
AT4G11540.1 Thale cress cytosol 40.18 67.81
CDY22034 Canola endoplasmic reticulum 47.29 66.61
AT4G01930.1 Thale cress cytosol 47.97 65.18
AT4G01920.1 Thale cress cytosol 47.74 64.29
AT4G01910.1 Thale cress cytosol 46.95 63.9
AT4G02190.1 Thale cress cytosol 46.84 62.97
AT4G01760.1 Thale cress cytosol 47.29 62.82
AT4G01740.1 Thale cress cytosol 46.05 62.58
AT4G11550.1 Thale cress cytosol 46.39 61.53
CDY50383 Canola cytosol 55.76 58.6
AT4G11390.2 Thale cress cytosol 35.55 57.69
CDY22052 Canola nucleus 39.28 54.98
CDY50382 Canola cytosol 58.01 51.81
AT4G02180.1 Thale cress cytosol 50.56 45.3
CDY52927 Canola cytosol 19.19 45.09
CDY30196 Canola cytosol 20.77 44.99
CDY41709 Canola peroxisome 26.07 43.92
CDY06776 Canola cytosol 14.0 43.51
CDY58516 Canola nucleus 24.38 43.03
CDY46706 Canola mitochondrion 25.73 42.78
CDY48718 Canola cytosol 17.72 42.32
CDY63456 Canola cytosol 18.85 42.28
CDY29992 Canola cytosol 12.42 41.98
CDY51540 Canola nucleus 24.04 41.52
CDY27940 Canola cytosol 26.3 41.31
CDY36839 Canola cytosol 28.1 41.16
CDY63460 Canola cytosol, mitochondrion 19.3 41.11
CDX93183 Canola cytosol 30.81 40.99
CDY28703 Canola cytosol 23.02 40.96
CDY60784 Canola cytosol 14.9 39.29
CDY63290 Canola cytosol 21.9 38.65
CDX74184 Canola plasma membrane 17.72 38.29
CDY09238 Canola cytosol 20.43 38.11
CDY30007 Canola cytosol, nucleus, plastid 28.56 38.05
CDY09240 Canola cytosol 20.32 37.89
CDY64703 Canola cytosol 28.22 37.65
CDY44574 Canola cytosol 20.43 37.55
CDY27938 Canola cytosol 18.4 37.13
CDX67463 Canola cytosol 19.41 37.07
CDY29993 Canola cytosol 25.73 36.95
CDY44167 Canola cytosol 20.43 36.79
CDY21132 Canola cytosol 25.06 36.27
CDY22883 Canola cytosol 26.07 35.38
CDX71062 Canola cytosol 24.94 35.3
CDX88733 Canola cytosol 24.83 35.26
CDY43524 Canola cytosol 19.98 34.98
CDX74183 Canola cytosol 13.43 34.59
CDY42579 Canola nucleus 10.27 33.21
CDY40661 Canola cytosol 27.99 32.55
CDY36353 Canola plastid 10.95 31.09
CDX82703 Canola cytosol 32.17 29.53
KRG95394 Soybean nucleus 17.49 27.34
KRH67075 Soybean nucleus 16.93 26.32
Protein Annotations
Gene3D:3.30.365.10MapMan:35.1GO:A0A078G6F6UniProt:A0A078G6F6InterPro:AldOxase/xan_DH_Mopterin-bdInterPro:AldOxase/xan_DH_Mopterin-bd_sf
EnsemblPlants:CDY22035ProteinID:CDY22035ProteinID:CDY22035.1InterPro:DC1GO:GO:0003674GO:GO:0003824
GO:GO:0008150GO:GO:0008152GO:GO:0016491GO:GO:0047134GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00018405001
PFAM:PF02738PFAM:PF03107SUPFAM:SSF56003SUPFAM:SSF57889UniParc:UPI0004EDCB2DSEG:seg
Description
BnaA09g00640DBnaA09g00640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G6F6]
Coordinates
chrLK032127:+:222078..226566
Molecular Weight (calculated)
100538.0 Da
IEP (calculated)
6.787
GRAVY (calculated)
-0.244
Length
886 amino acids
Sequence
(BLAST)
001: MGLGSKWFSL DTPATPERIR MACLDEFTSP FVKQMESEGV SLPLIHEHPM KPWNDLRKGD CCQRFVSQSD GYYCKTCDFF LHKECGELSE FIIDHPAHPD
101: HTLQLRHDKG GNICDSCGRK IVNLCYRCEM CDFDVDLHCA KYPPPDVIDN FETHPHKLTL LKEQTEFECS AKCRKGASEL NYSPEVNHSY HSLHPLKLLT
201: GPPPHYSDGK CRLCGTDIGE YFYHCSSCNF TVDLPCVFNP PPKSSADPKV HDHQLTLLPR LDSFTCNACG LKGDRSPYAC FDCGFMIHQD CLGLPRVINI
301: NRHDHRVSRT SVLGDTAMNS VCRVCRKKVD WTYGGFSCKR CPGYVVHSKC ATRKDVWNGK ELEGIPEEEE DIEPYVVIDE NTIQHFSHKE HYLRRIHGNG
401: VWYEENKRCS ACIHLIGLQS FYGCVDCDFY LHHKCAECPK MKRHVLHNDR LTLVTNEELE VFNCLVCDRA SSGFMYKDGN RKLDVLCGSV SEPFFHPSHI
501: HHPLYYIPTE EEEICNGCNR REHHMLRCIE GDCGFVLGFK CATLPQVVKH IVDDHPLSLC YGQEEEASGK YWCDICEKET NPKEWFYTCK NQQASLHTMC
601: VLGDCTGLMP RSVAKLWGKP TEVVLNNSVT RPFCIWCKSR CMYPIKLKLL GTSGTYACSL ECAFYFIIIL IDSLPLSVDL PNAGALVHVY TVLVTHGGVE
701: MGQGLHTKVA QVSASAFNIP LSSVFVSETS TGKVIDFLRT ERTITVKQCI TSVVTHISPS FCLRHEEGDL TGFPDISTTA APSVFDTFAY ETKITVCSRT
801: YTSTVLNYIY TLQMKLRTDY ETKNWLSLTK LHSPVNSIFN ILLQHLEHLG TAVYLIFIIQ CTNATARAPW DSCVLNIQYT IYKCNS
Best Arabidopsis Sequence Match ( AT4G01930.1 )
(BLAST)
001: MDSEGVSLPL IHKHHMLPWN DMRKGDCCRR FEAISDGYYC KTCDFFVHKS CGDRSSEYIE HPSHPSHALQ LLRKPGHTRN CNLCGISIKS LFYNCEICNF
101: NVHMYCAKYP PPQVIDISET HHHKLNLYKK PNYIDCGDKC GKLSYEFSYK CQECDLAFHV DCAWRPSESN LPLEVNHFYH SLHPLKLVRG KLPDYSDRKC
201: RLCGRYIGDR LFYHCSSCNF TLDMRCVLNP PQQSLLNLKA HDHQLTLLPR LDSFTCNACG LKGDRSPYVC FQCGFMIHQD CLDLPRVINI NRHDHRVSRT
301: SVLGVVKSVC GVCHQKVDWT CGGFSCQRCH GYVVHSKCAT RKDVWNGKEL EGVPEETEDI QPYVVIDENT IQHFSHKEHY LRLHVNGVLC DDNKWCSACT
401: HPICLQSFYG CMDCDFILHQ NCAGFRRMKW HVLHNERLTL VINEAEPFRC YACDRWSNGF RYHQGNITFD VRCGSIAEPF LHPSHPDHPL YHTLPDGGIK
501: ICNGCKNGFY DVLGCIEDDC RFAICFKCAT FPQVVKHRVD DHPLSLCYGE KASGKYWCDI CEKETNPEIW FYTCKDYQAS LHIECVVGAL SLLMPRSTIN
601: PWEKSYEVVL NNSASRPFCS YCELRCIFPI ILKRLGSSDN YVCSYFCALF CI
Arabidopsis Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9SYJ0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.