CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44574	Canola	cytosol	44.82	46.68
CDY36839	Canola	cytosol	52.19	43.31
CDY60784	Canola	cytosol	25.9	38.69
CDY41709	Canola	peroxisome	40.24	38.4
CDY30196	Canola	cytosol	31.08	38.14
CDY27938	Canola	cytosol	33.27	38.04
CDY46706	Canola	mitochondrion	39.04	36.77
CDY27940	Canola	cytosol	40.64	36.17
CDY63456	Canola	cytosol	27.89	35.44
CDY22036	Canola	cytosol	41.63	35.07
CDY36353	Canola	plastid	21.71	34.94
CDY21921	Canola	plastid	26.29	34.74
CDY52787	Canola	nucleus	43.63	34.71
CDY28703	Canola	cytosol	33.67	33.94
CDY51540	Canola	nucleus	34.46	33.72
CDX97701	Canola	cytosol	14.14	33.49
CDY69979	Canola	nucleus	42.43	33.44
CDY63290	Canola	cytosol	32.87	32.87
CDY52927	Canola	cytosol	23.9	31.83
CDY65338	Canola	cytosol	42.43	31.79
CDX93183	Canola	cytosol	40.64	30.63
CDY42579	Canola	nucleus	16.53	30.29
CDY64703	Canola	cytosol	39.84	30.12
CDY22034	Canola	endoplasmic reticulum	37.45	29.89
CDY44167	Canola	cytosol	29.08	29.67
CDY30007	Canola	cytosol, nucleus, plastid	38.84	29.32
CDY21132	Canola	cytosol	35.66	29.25
CDY29993	Canola	cytosol	35.66	29.01
CDX67463	Canola	cytosol	26.1	28.23
CDY09238	Canola	cytosol	26.49	28.0
CDY22883	Canola	cytosol	36.26	27.87
CDX71062	Canola	cytosol	34.66	27.8
CDY09240	Canola	cytosol	26.29	27.79
CDY48718	Canola	cytosol	20.32	27.49
CDX88733	Canola	cytosol	34.06	27.4
CDY06776	Canola	cytosol	15.54	27.37
CDY52789	Canola	cytosol	21.71	26.85
CDY29992	Canola	cytosol	13.55	25.95
CDY43524	Canola	cytosol	25.7	25.49
CDY40661	Canola	cytosol	38.45	25.33
CDY50383	Canola	cytosol	42.43	25.27
CDY63460	Canola	cytosol, mitochondrion	20.52	24.76
CDY22035	Canola	cytosol	43.03	24.38
CDX74184	Canola	plasma membrane	19.52	23.9
KRG95394	Soybean	nucleus	26.1	23.1
KRH67075	Soybean	nucleus	25.5	22.46
CDX74183	Canola	cytosol	15.34	22.38
CDY22052	Canola	nucleus	28.09	22.27
CDY50382	Canola	cytosol	40.84	20.67
CDX82703	Canola	cytosol	37.05	19.27

Protein Annotations

EnsemblPlants:CDY58516	EnsemblPlantsGene:GSBRNA2T00024806001	GO:A0A078J6C2	GO:GO:0003674	GO:GO:0003824	GO:GO:0047134
InterPro:DC1	PANTHER:PTHR32410	PFAM:PF03107	ProteinID:CDY58516	ProteinID:CDY58516.1	SEG:seg
SUPFAM:SSF57889	UniParc:UPI0004EBF67E	UniProt:A0A078J6C2	MapMan:35.2	:	:

Description

BnaCnng33300DBnaCnng33300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6C2]

Coordinates

chrLK033675:-:41165..42901

Molecular Weight (calculated)

57638.3 Da

IEP (calculated)

6.214

GRAVY (calculated)

-0.393

Length

502 amino acids

Sequence
(BLAST)

001: MVRLDNLSDE DFVNLDLSDE DKANFYQWDE DSKYFFHGCT EINDSGGYHC SDCDMYLHKE CAESPSEINH PSHTRHPLTL LTQGAPDDSH INSCRLCGGK
101: FRRLIYHCSE CEFSLDPVCA RKPPPLIVDH LKGHEHVLTL MPRLIFFTCN ACGMVGDRSP YIDGKYGAYS CLKCPQYAVH SRCATREDVW DGEELEYEPE
201: EEMEDVEPFK VVGENLINHF THEEHNLRFK EGGGGEERMR CRACVLPIDL DSFYSCVDCD FILHEVCANL PRKKRHVLHN TSLTLQTHIP HHKLYKGVFR
301: CSACKEFSSG FSYIGCGIQL DVRCGSITEP FVHQGHPHPL FFTLPDPKTC RSCGIWQYKV LNCIECDFPL CFGCATLPYV VRNQKHDRHP ITLCFGEKAS
401: TGQYWCDICE TRLNPSKYFY TCEDCASTLH VHCVHLEGLL HVKPGNKFSY FGYGFEMVLG NRINRPRCES CYELCVGSFL LSTDYKDMYA CSKSCLYEFP
501: QR

Best Arabidopsis Sequence Match ( AT5G40320.1 )
(BLAST)

001: MVLVEELSDV SSPTNEANQA YSYDDDDDDD GSLTPSMVFD QIMGTSLMLP FHEHPVYNHY SSTGQCDGCP ELRENGLHGY NCNTCGLTVH KECAESSPEI
101: NHPSHQRHPL MLLTHGLPQE AEDDKCRLCG EKVGKLVYHC SICDFSLDLF CARNPLSLVV YFRKGHEHTL TLMPRLIRFT CNACGLESDR SPYICAQCDF
201: MIHEDCIYLP RVISIIRHEH RISRTYFLGS GDWKCGVCRR RMDGRYGAYS CSICPDYAVH SRCATRRDVW DGLELEDEPE DIEECEEPFR VVSDGVINHF
301: SHREHDLRLE DGLTNRHDEN IRCRACVRPV YANTFYSCMQ CDDFILHETC ANLPRKKRHV LHNHQLTLYP DDNIVMDFPM LRGVFLCTAC RRLCSGFRYE
401: CCNIKLDVRC GSISEPFFYE CHPHPLFQTS LDSKVCETCK EESDYVLTCM DCDYVLDFEC ATLPPTVRYK YDRHPLKLCY DGDKDMAGSY WCEICEKEMD
501: QNIIFYTCES SGPTIHIECV LGDFRYVKPR LHFEFNKKKW EVALNGINRP GCYKCGFRCK GPFVAVSVDY DISYVCSLLC LWKGETLVYG SIRD

Arabidopsis Description

CHP-rich zinc finger protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FNE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.