CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81261
CDX86029
CDX99153
CDY03408
CDY08844
CDY11652
CDY14517
CDY18692
CDY21814
CDY31298
CDY34322
CDY46357
CDY46828
CDY48156
CDY53953
CDY56082
CDY66333
CDY68857

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G01920.1	CDY11652	AT1G69810.1	21798944
AT4G01920.1	CDY56082	AT1G69810.1	21798944
AT4G01920.1	CDY68857	AT1G69810.1	21798944
AT4G01920.1	CDY46357	AT3G28715.1	21798944
AT4G01920.1	CDX86029	AT3G45640.1	21798944
AT4G01920.1	CDX99153	AT3G45640.1	21798944
AT4G01920.1	CDY21814	AT3G48210.1	21798944
AT4G01920.1	CDY48156	AT3G48210.1	21798944
AT4G01920.1	CDY53953	AT3G48210.1	21798944
AT4G01920.1	CDY66333	AT4G15700.1	21798944
AT4G01920.1	CDY03408	AT4G24900.1	21798944
AT4G01920.1	CDY34322	AT4G24900.1	21798944
AT4G01920.1	CDX81261	AT5G64850.1	21798944
AT4G01920.1	CDY08844	AT5G64850.1	21798944
AT4G01920.1	CDY14517	AT5G64850.1	21798944
AT4G01920.1	CDY18692	AT5G64850.1	21798944
AT4G01920.1	CDY31298	AT5G64850.1	21798944
AT4G01920.1	CDY46828	AT5G64850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69979	Canola	nucleus	84.79	83.99
CDX97701	Canola	cytosol	25.99	77.36
CDY22036	Canola	cytosol	71.16	75.34
CDY52789	Canola	cytosol	48.34	75.12
CDY65338	Canola	cytosol	79.24	74.63
AT4G01925.1	Thale cress	cytosol	32.81	73.93
CDY21921	Canola	plastid	41.68	69.21
CDY22034	Canola	endoplasmic reticulum	67.35	67.57
AT4G11540.1	Thale cress	cytosol	55.63	66.86
AT4G01930.1	Thale cress	cytosol	68.94	66.72
AT4G01910.1	Thale cress	cytosol	68.15	66.05
AT4G01740.1	Thale cress	cytosol	67.67	65.49
AT4G01920.1	Thale cress	cytosol	67.35	64.59
AT4G02190.1	Thale cress	cytosol	67.04	64.19
AT4G01760.1	Thale cress	cytosol	67.19	63.57
AT4G11550.1	Thale cress	cytosol	67.19	63.47
CDY50383	Canola	cytosol	82.73	61.92
CDY22052	Canola	nucleus	56.42	56.24
CDY22035	Canola	cytosol	77.65	55.3
AT4G11390.2	Thale cress	cytosol	47.07	54.4
CDY50382	Canola	cytosol	77.81	49.5
AT4G02180.1	Thale cress	cytosol	68.78	43.88
CDY52927	Canola	cytosol	26.15	43.77
CDY58516	Canola	nucleus	34.71	43.63
CDY51540	Canola	nucleus	35.34	43.47
CDY30196	Canola	cytosol	27.89	43.03
CDY28703	Canola	cytosol	33.91	42.97
CDY63456	Canola	cytosol	26.62	42.53
CDY29992	Canola	cytosol	17.59	42.37
CDY48718	Canola	cytosol	24.88	42.32
CDY06776	Canola	cytosol	18.86	41.75
CDY41709	Canola	peroxisome	34.39	41.25
CDY46706	Canola	mitochondrion	34.71	41.09
CDY27940	Canola	cytosol	36.45	40.78
CDX93183	Canola	cytosol	42.95	40.69
CDY36839	Canola	cytosol	38.83	40.5
CDY60784	Canola	cytosol	21.55	40.48
CDY63460	Canola	cytosol, mitochondrion	25.99	39.42
CDY64703	Canola	cytosol	40.41	38.4
CDY30007	Canola	cytosol, nucleus, plastid	40.25	38.2
CDY09238	Canola	cytosol	28.68	38.11
CDY63290	Canola	cytosol	30.27	38.05
CDY09240	Canola	cytosol	28.53	37.89
CDY21132	Canola	cytosol	36.13	37.25
CDY44574	Canola	cytosol	28.37	37.14
CDY44167	Canola	cytosol	28.84	36.99
CDY29993	Canola	cytosol	36.13	36.95
CDY27938	Canola	cytosol	25.52	36.67
CDX74184	Canola	plasma membrane	23.61	36.34
CDX67463	Canola	cytosol	26.62	36.21
CDX88733	Canola	cytosol	35.66	36.06
CDX71062	Canola	cytosol	35.5	35.78
CDY22883	Canola	cytosol	36.93	35.68
CDX74183	Canola	cytosol	19.02	34.88
CDY43524	Canola	cytosol	27.1	33.79
CDY42579	Canola	nucleus	14.26	32.85
CDY36353	Canola	plastid	16.16	32.69
CDY40661	Canola	cytosol	39.14	32.41
KRG95394	Soybean	nucleus	25.67	28.57
KRH67075	Soybean	nucleus	24.88	27.54
CDX82703	Canola	cytosol	40.73	26.63

Protein Annotations

EnsemblPlants:CDY52787	EnsemblPlantsGene:GSBRNA2T00007844001	GO:A0A078IS34	GO:GO:0003674	GO:GO:0003824	GO:GO:0047134
InterPro:DC1	PFAM:PF03107	ProteinID:CDY52787	ProteinID:CDY52787.1	SEG:seg	SUPFAM:SSF57889
UniParc:UPI0004EF43BF	UniProt:A0A078IS34	MapMan:35.2	:	:	:

Description

BnaCnng23320DBnaCnng23320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IS34]

Coordinates

chrLK033130:-:64317..66275

Molecular Weight (calculated)

72916.7 Da

IEP (calculated)

6.620

GRAVY (calculated)

-0.497

Length

631 amino acids

Sequence
(BLAST)

001: MESEGRVLLP LFDEHPMMPW NDLRKGDCCG RYESQSDGYY CKNCNFFVHK KCGDELSEFI DHPSHPNHTL QLRHDKGVNI CDLCSREIVN LCYRCEMCDF
101: DVDLGCAKRQ PPNVIDNFET HPHKLILLKE RTEFDSFHVD CVWHPATDHP TEVNHPYHSL HPLKLLTGPP PDYSDGKCRL CGGKVDKELF YHCSSCNFTL
201: DMRCVLNPPQ KSLVEPKVHD HQLTLLPRLD SFTCNACGLK GDRSPYACFD CGFMIHQECL CLPRVININR HDHRVYRTSV LGVVDSVCGV CRKQVDWTCG
301: GFSCKRCPGY VVHSKCATRN DVWNGKELEG VPEEEEDVEP YVVIDENTIQ HFSHKEHYLR FNENGVLYEE NKRCSACTHP IGLHSFYTCM DCDFSLHQKC
401: AECPKRKRHV LHNERLTLDT NKDLEVFRCD ACYRRSNGFM YKDGDKMLDV LCGSISEPFV HPSHPHHPLY YIPTENDDKI CNGCNSRKGY VLRCIEDDCI
501: FVLCFECATL PKVVKHRVDD HPLSLCYGEE EKASGKYWCD ICEKETDSKE WFYTCKDQRA SLHRECVLGD STGLMPRTVA TLFRQSYKVG LNNSVTRPFC
601: SWCESRCMYP IYFKLLGRTS ETYFCSFCCA C

Best Arabidopsis Sequence Match ( AT4G01930.1 )
(BLAST)

001: MDSEGVSLPL IHKHHMLPWN DMRKGDCCRR FEAISDGYYC KTCDFFVHKS CGDRSSEYIE HPSHPSHALQ LLRKPGHTRN CNLCGISIKS LFYNCEICNF
101: NVHMYCAKYP PPQVIDISET HHHKLNLYKK PNYIDCGDKC GKLSYEFSYK CQECDLAFHV DCAWRPSESN LPLEVNHFYH SLHPLKLVRG KLPDYSDRKC
201: RLCGRYIGDR LFYHCSSCNF TLDMRCVLNP PQQSLLNLKA HDHQLTLLPR LDSFTCNACG LKGDRSPYVC FQCGFMIHQD CLDLPRVINI NRHDHRVSRT
301: SVLGVVKSVC GVCHQKVDWT CGGFSCQRCH GYVVHSKCAT RKDVWNGKEL EGVPEETEDI QPYVVIDENT IQHFSHKEHY LRLHVNGVLC DDNKWCSACT
401: HPICLQSFYG CMDCDFILHQ NCAGFRRMKW HVLHNERLTL VINEAEPFRC YACDRWSNGF RYHQGNITFD VRCGSIAEPF LHPSHPDHPL YHTLPDGGIK
501: ICNGCKNGFY DVLGCIEDDC RFAICFKCAT FPQVVKHRVD DHPLSLCYGE KASGKYWCDI CEKETNPEIW FYTCKDYQAS LHIECVVGAL SLLMPRSTIN
601: PWEKSYEVVL NNSASRPFCS YCELRCIFPI ILKRLGSSDN YVCSYFCALF CI

Arabidopsis Description

Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9SYJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.