Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08844 | Canola | nucleus | 97.41 | 97.41 |
| CDX81261 | Canola | nucleus | 91.38 | 91.38 |
| CDY31298 | Canola | nucleus | 85.34 | 85.34 |
| CDY46828 | Canola | nucleus | 84.48 | 83.76 |
| AT5G64850.1 | Thale cress | nucleus | 81.9 | 83.33 |
| CDX69874 | Canola | nucleus | 71.55 | 74.11 |
| CDY21617 | Canola | nucleus | 71.55 | 73.45 |
| CDY40070 | Canola | nucleus | 68.97 | 70.8 |
| CDX85786 | Canola | nucleus | 68.1 | 69.91 |
| Solyc04g051820.2.1 | Tomato | nucleus | 55.17 | 65.31 |
| CDY18692 | Canola | nucleus | 77.59 | 63.83 |
| VIT_07s0031g01630.t01 | Wine grape | nucleus | 51.72 | 61.22 |
| KRH53801 | Soybean | nucleus | 53.45 | 60.78 |
| Solyc04g011910.2.1 | Tomato | nucleus | 50.0 | 60.42 |
| Solyc05g051710.2.1 | Tomato | nucleus | 52.59 | 59.22 |
| KRH43319 | Soybean | nucleus | 45.69 | 55.21 |
| KRH64143 | Soybean | cytosol, endoplasmic reticulum, nucleus | 47.41 | 55.0 |
| PGSC0003DMT400042668 | Potato | nucleus | 46.55 | 52.94 |
| PGSC0003DMT400077395 | Potato | nucleus | 48.28 | 52.83 |
| Bra024332.1-P | Field mustard | cytosol | 40.52 | 51.65 |
| HORVU2Hr1G087230.1 | Barley | cytosol | 30.17 | 51.47 |
| HORVU3Hr1G059370.1 | Barley | cytosol | 28.45 | 48.53 |
| HORVU6Hr1G039070.1 | Barley | cytosol | 27.59 | 47.06 |
| GSMUA_Achr6P10580_001 | Banana | nucleus | 37.93 | 43.14 |
| KXG38577 | Sorghum | cytosol | 42.24 | 42.98 |
| Zm00001d027851_P001 | Maize | cytosol | 38.79 | 42.06 |
| TraesCS4B01G286900.1 | Wheat | nucleus | 42.24 | 41.53 |
| TraesCS4A01G017200.1 | Wheat | nucleus | 40.52 | 40.52 |
| KRH59453 | Soybean | cytosol | 44.83 | 40.31 |
| Zm00001d033003_P001 | Maize | cytosol | 39.66 | 39.66 |
| TraesCS4D01G285600.1 | Wheat | nucleus | 40.52 | 39.5 |
| EER92785 | Sorghum | cytosol, mitochondrion, nucleus | 40.52 | 38.52 |
| Zm00001d014200_P001 | Maize | nucleus | 39.66 | 38.02 |
| Os03t0169900-01 | Rice | cytosol | 37.93 | 37.93 |
| Os10t0405300-01 | Rice | plasma membrane | 37.07 | 36.44 |
| GSMUA_Achr10P... | Banana | nucleus | 39.66 | 35.94 |
| Zm00001d048317_P001 | Maize | cytosol | 37.07 | 34.96 |
| HORVU2Hr1G071440.2 | Barley | cytosol | 32.76 | 34.55 |
| HORVU5Hr1G046790.1 | Barley | cytosol | 31.9 | 31.09 |
| HORVU0Hr1G012080.1 | Barley | cytosol | 32.76 | 29.92 |
| GSMUA_Achr3P21420_001 | Banana | nucleus | 37.07 | 29.05 |
| KRH15631 | Soybean | plastid | 43.1 | 28.9 |
| HORVU1Hr1G071050.2 | Barley | cytosol | 29.31 | 28.81 |
Protein Annotations
| EnsemblPlants:CDY14517 | EnsemblPlantsGene:GSBRNA2T00079226001 | PANTHER:PTHR33882 | PANTHER:PTHR33882:SF2 | ProteinID:CDY14517 | ProteinID:CDY14517.1 |
| UniParc:UPI0004EC5378 | UniProt:A0A078FNT6 | MapMan:35.2 | : | : | : |
Description
BnaC03g49420DBnaC03g49420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNT6]
Coordinates
chrLK032044:+:119119..120967
Molecular Weight (calculated)
13341.5 Da
IEP (calculated)
8.089
GRAVY (calculated)
-1.085
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDLKENKNS PWLSVPQFGD WDQKGGTIPD YSMDFTKIRE MRKQNKRDLS RASLGNEEDL INPFHNQPTS VDNTKPKLTT VHSDNNRTNT EFSHHQPLSP
101: STRRGIFSCF NCCVKA
101: STRRGIFSCF NCCVKA
001: MEDRKENKNS PWLSVPQFGD WDQKGGSIDY SMDFSKIREM RKLNKRDASR ASLGNEEELI NPFHDQPPVD TAKPKKLTTV HSDNNNRNEF SHHHPHSPSR
101: RRRIFSCFNC CVKA
101: RRRIFSCFNC CVKA
Arabidopsis Description
At5g64850 [Source:UniProtKB/TrEMBL;Acc:Q0WN19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.