Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g051710.2.1 | Tomato | nucleus | 68.87 | 70.87 |
| KRH43319 | Soybean | nucleus | 53.77 | 59.38 |
| PGSC0003DMT400042668 | Potato | nucleus | 55.66 | 57.84 |
| VIT_07s0031g01630.t01 | Wine grape | nucleus | 52.83 | 57.14 |
| KRH64143 | Soybean | cytosol, endoplasmic reticulum, nucleus | 51.89 | 55.0 |
| KRH53801 | Soybean | nucleus | 51.89 | 53.92 |
| AT5G64850.1 | Thale cress | nucleus | 54.72 | 50.88 |
| HORVU2Hr1G087230.1 | Barley | cytosol | 32.08 | 50.0 |
| CDX81261 | Canola | nucleus | 53.77 | 49.14 |
| CDY31298 | Canola | nucleus | 53.77 | 49.14 |
| AT5G09960.1 | Thale cress | nucleus | 51.89 | 49.11 |
| CDY46828 | Canola | nucleus | 53.77 | 48.72 |
| CDY21617 | Canola | nucleus | 51.89 | 48.67 |
| HORVU3Hr1G059370.1 | Barley | cytosol | 31.13 | 48.53 |
| CDY14517 | Canola | nucleus | 52.83 | 48.28 |
| CDY08844 | Canola | nucleus | 52.83 | 48.28 |
| CDX69874 | Canola | nucleus | 50.94 | 48.21 |
| CDY40070 | Canola | nucleus | 50.94 | 47.79 |
| CDX85786 | Canola | nucleus | 50.0 | 46.9 |
| Bra028607.1-P | Field mustard | nucleus | 49.06 | 46.02 |
| KRH59453 | Soybean | cytosol | 53.77 | 44.19 |
| HORVU6Hr1G039070.1 | Barley | cytosol | 28.3 | 44.12 |
| Zm00001d027851_P001 | Maize | cytosol | 40.57 | 40.19 |
| CDY18692 | Canola | nucleus | 51.89 | 39.01 |
| Bra037798.1-P | Field mustard | nucleus | 51.89 | 39.01 |
| Bra024332.1-P | Field mustard | cytosol | 33.02 | 38.46 |
| GSMUA_Achr6P10580_001 | Banana | nucleus | 35.85 | 37.25 |
| Zm00001d014200_P001 | Maize | nucleus | 42.45 | 37.19 |
| TraesCS4A01G017200.1 | Wheat | nucleus | 40.57 | 37.07 |
| KXG38577 | Sorghum | cytosol | 39.62 | 36.84 |
| Bra031897.1-P | Field mustard | cytosol | 52.83 | 36.6 |
| TraesCS4B01G286900.1 | Wheat | nucleus | 40.57 | 36.44 |
| Os10t0405300-01 | Rice | plasma membrane | 40.57 | 36.44 |
| TraesCS4D01G285600.1 | Wheat | nucleus | 40.57 | 36.13 |
| Os03t0169900-01 | Rice | cytosol | 38.68 | 35.34 |
| EER92785 | Sorghum | cytosol, mitochondrion, nucleus | 39.62 | 34.43 |
| Zm00001d048317_P001 | Maize | cytosol | 39.62 | 34.15 |
| Zm00001d033003_P001 | Maize | cytosol | 36.79 | 33.62 |
| GSMUA_Achr10P... | Banana | nucleus | 38.68 | 32.03 |
| HORVU2Hr1G071440.2 | Barley | cytosol | 33.02 | 31.82 |
| HORVU5Hr1G046790.1 | Barley | cytosol | 33.96 | 30.25 |
| HORVU1Hr1G071050.2 | Barley | cytosol | 32.08 | 28.81 |
| HORVU0Hr1G012080.1 | Barley | cytosol | 33.96 | 28.35 |
| KRH15631 | Soybean | plastid | 45.28 | 27.75 |
| GSMUA_Achr3P21420_001 | Banana | nucleus | 35.85 | 25.68 |
| Bra009071.1-P | Field mustard | nucleus | 51.89 | 23.11 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400077395 | EnsemblPlantsGene:PGSC0003DMG400030107 | InterPro:TypeIII_avirulence_cleave | PANTHER:PTHR33882 | PANTHER:PTHR33882:SF2 | PFAM:PF05627 |
| PGSC:PGSC0003DMG400030107 | SEG:seg | UniParc:UPI0002968E69 | UniProt:M1CYD5 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400030107]
Coordinates
chr5:+:46841669..46844132
Molecular Weight (calculated)
12287.0 Da
IEP (calculated)
6.941
GRAVY (calculated)
-1.148
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDRKEQKAA PWLSVPQFGD WDQKGALPDY SMDFSKIREN RKQNKSRASL GNEEDFNSIS TTSNNNNVNT SHSTQNNDQT YHQKHSPTHV RFCDINSFIY
101: PCFLLS
101: PCFLLS
001: MEDRKENKNS PWLSVPQFGD WDQKGGSIDY SMDFSKIREM RKLNKRDASR ASLGNEEELI NPFHDQPPVD TAKPKKLTTV HSDNNNRNEF SHHHPHSPSR
101: RRRIFSCFNC CVKA
101: RRRIFSCFNC CVKA
Arabidopsis Description
At5g64850 [Source:UniProtKB/TrEMBL;Acc:Q0WN19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.