CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, mitochondrion

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048317_P001	Maize	cytosol	74.59	73.98
HORVU3Hr1G059370.1	Barley	cytosol	40.98	73.53
HORVU2Hr1G087230.1	Barley	cytosol	40.16	72.06
HORVU6Hr1G039070.1	Barley	cytosol	36.89	66.18
Os03t0169900-01	Rice	cytosol	62.3	65.52
TraesCS4B01G286900.1	Wheat	nucleus	61.48	63.56
TraesCS4A01G017200.1	Wheat	nucleus	59.84	62.93
KXG38577	Sorghum	cytosol	56.56	60.53
TraesCS4D01G285600.1	Wheat	nucleus	59.02	60.5
GSMUA_Achr6P10580_001	Banana	nucleus	44.26	52.94
HORVU2Hr1G071440.2	Barley	cytosol	45.9	50.91
KRH53801	Soybean	nucleus	41.8	50.0
Solyc04g011910.2.1	Tomato	nucleus	36.07	45.83
VIT_07s0031g01630.t01	Wine grape	nucleus	36.07	44.9
HORVU1Hr1G071050.2	Barley	cytosol	42.62	44.07
GSMUA_Achr10P...	Banana	nucleus	45.9	43.75
KRH64143	Soybean	cytosol, endoplasmic reticulum, nucleus	35.25	43.0
Solyc04g051820.2.1	Tomato	nucleus	34.43	42.86
KRH43319	Soybean	nucleus	33.61	42.71
HORVU5Hr1G046790.1	Barley	cytosol	40.98	42.02
CDY14517	Canola	nucleus	38.52	40.52
AT5G64850.1	Thale cress	nucleus	37.7	40.35
CDX69874	Canola	nucleus	36.89	40.18
CDY21617	Canola	nucleus	36.89	39.82
Solyc05g051710.2.1	Tomato	nucleus	33.61	39.81
CDY08844	Canola	nucleus	37.7	39.66
PGSC0003DMT400077395	Potato	nucleus	34.43	39.62
HORVU0Hr1G012080.1	Barley	cytosol	40.98	39.37
AT5G09960.1	Thale cress	nucleus	36.07	39.29
CDY40070	Canola	nucleus	36.07	38.94
Bra028607.1-P	Field mustard	nucleus	36.07	38.94
CDX85786	Canola	nucleus	36.07	38.94
CDX81261	Canola	nucleus	36.89	38.79
PGSC0003DMT400042668	Potato	nucleus	30.33	36.27
CDY31298	Canola	nucleus	34.43	36.21
CDY46828	Canola	nucleus	34.43	35.9
Bra024332.1-P	Field mustard	cytosol	24.59	32.97
GSMUA_Achr3P21420_001	Banana	nucleus	38.52	31.76
CDY18692	Canola	nucleus	34.43	29.79
KRH59453	Soybean	cytosol	31.15	29.46
Bra037798.1-P	Field mustard	nucleus	33.61	29.08
Bra031897.1-P	Field mustard	cytosol	33.61	26.8
KRH15631	Soybean	plastid	31.97	22.54
Bra009071.1-P	Field mustard	nucleus	39.34	20.17

Protein Annotations

EnsemblPlants:EER92785	EnsemblPlantsGene:SORBI_3001G489600	EntrezGene:8082119	InterPro:TypeIII_avirulence_cleave	PANTHER:PTHR33882	PANTHER:PTHR33882:SF1
PFAM:PF05627	ProteinID:EER92785	ProteinID:EER92785.1	RefSeq:XP_002465787.1	SEG:seg	unigene:Sbi.21411
UniParc:UPI0001A82A5B	UniProt:C5WWR3	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:75982834..75985774

Molecular Weight (calculated)

13740.2 Da

IEP (calculated)

10.142

GRAVY (calculated)

-1.116

Length

122 amino acids

Sequence
(BLAST)

001: MENLKEQRGH DAAGGNNAWM TVPAFGDWDM KNGALPDYSM DFSKIREMRK QNKKELSRAS IGGDDDLLAH AQAHKPQSNN AQPKLGRPRP ADDHRRRPLH
101: ARDHSPTGGK KFLSYFQCCI KA

Best Arabidopsis Sequence Match ( AT5G09960.1 )
(BLAST)

001: MEDDRKEKNT PWLSVPQFGD WDQKGGGTMP DYSMDFTKIR EMRKQNKRDP SRASLGNEEE LIKPPESATS TAELTTVQSE NQREFSPSHH HQPHSPSTRR
101: SMFSCFNCCV KA

Arabidopsis Description

At5g09960 [Source:UniProtKB/TrEMBL;Acc:Q67XU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.