Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G286900.1 | Wheat | nucleus | 92.24 | 90.68 |
| TraesCS4D01G285600.1 | Wheat | nucleus | 86.21 | 84.03 |
| HORVU2Hr1G087230.1 | Barley | cytosol | 48.28 | 82.35 |
| HORVU3Hr1G059370.1 | Barley | cytosol | 47.41 | 80.88 |
| HORVU6Hr1G039070.1 | Barley | cytosol | 43.97 | 75.0 |
| Zm00001d027851_P001 | Maize | cytosol | 62.07 | 67.29 |
| EER92785 | Sorghum | cytosol, mitochondrion, nucleus | 62.93 | 59.84 |
| Os03t0169900-01 | Rice | cytosol | 59.48 | 59.48 |
| Zm00001d048317_P001 | Maize | cytosol | 62.07 | 58.54 |
| HORVU2Hr1G071440.2 | Barley | cytosol | 54.31 | 57.27 |
| KRH53801 | Soybean | nucleus | 43.97 | 50.0 |
| VIT_07s0031g01630.t01 | Wine grape | nucleus | 42.24 | 50.0 |
| GSMUA_Achr6P10580_001 | Banana | nucleus | 43.1 | 49.02 |
| Solyc04g051820.2.1 | Tomato | nucleus | 41.38 | 48.98 |
| Solyc04g011910.2.1 | Tomato | nucleus | 40.52 | 48.96 |
| HORVU5Hr1G046790.1 | Barley | cytosol | 49.14 | 47.9 |
| KRH43319 | Soybean | nucleus | 37.07 | 44.79 |
| HORVU0Hr1G012080.1 | Barley | cytosol | 47.41 | 43.31 |
| KRH64143 | Soybean | cytosol, endoplasmic reticulum, nucleus | 37.07 | 43.0 |
| GSMUA_Achr10P... | Banana | nucleus | 47.41 | 42.97 |
| CDX69874 | Canola | nucleus | 41.38 | 42.86 |
| CDY21617 | Canola | nucleus | 41.38 | 42.48 |
| HORVU1Hr1G071050.2 | Barley | cytosol | 43.1 | 42.37 |
| AT5G09960.1 | Thale cress | nucleus | 40.52 | 41.96 |
| Solyc05g051710.2.1 | Tomato | nucleus | 37.07 | 41.75 |
| CDY40070 | Canola | nucleus | 40.52 | 41.59 |
| CDX85786 | Canola | nucleus | 40.52 | 41.59 |
| PGSC0003DMT400042668 | Potato | nucleus | 36.21 | 41.18 |
| Bra028607.1-P | Field mustard | nucleus | 39.66 | 40.71 |
| PGSC0003DMT400077395 | Potato | nucleus | 37.07 | 40.57 |
| CDY14517 | Canola | nucleus | 40.52 | 40.52 |
| AT5G64850.1 | Thale cress | nucleus | 39.66 | 40.35 |
| CDY08844 | Canola | nucleus | 39.66 | 39.66 |
| CDX81261 | Canola | nucleus | 38.79 | 38.79 |
| CDY31298 | Canola | nucleus | 37.93 | 37.93 |
| CDY46828 | Canola | nucleus | 37.93 | 37.61 |
| GSMUA_Achr3P21420_001 | Banana | nucleus | 42.24 | 33.11 |
| Bra024332.1-P | Field mustard | cytosol | 25.0 | 31.87 |
| KRH59453 | Soybean | cytosol | 33.62 | 30.23 |
| Bra037798.1-P | Field mustard | nucleus | 35.34 | 29.08 |
| CDY18692 | Canola | nucleus | 34.48 | 28.37 |
| Bra031897.1-P | Field mustard | cytosol | 37.07 | 28.1 |
| KRH15631 | Soybean | plastid | 34.48 | 23.12 |
| Bra009071.1-P | Field mustard | nucleus | 41.38 | 20.17 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G017200.1 | EnsemblPlantsGene:TraesCS4A01G017200 | InterPro:TypeIII_avirulence_cleave | PANTHER:PTHR33882 | PANTHER:PTHR33882:SF1 | PFAM:PF05627 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:11646568..11648337
Molecular Weight (calculated)
13114.5 Da
IEP (calculated)
9.595
GRAVY (calculated)
-1.148
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKDSHKEGE GATAWMTVPA FGDWDMKNGA MPDYSMDFSK IREMRKQNKK ELSRASLGGD DDLLAHHKQH HHQQQPAAKA PQQPTKLGAP AKDHGRDHSP
101: TGRKRFLSYF QCCIKA
101: TGRKRFLSYF QCCIKA
001: MEDDRKEKNT PWLSVPQFGD WDQKGGGTMP DYSMDFTKIR EMRKQNKRDP SRASLGNEEE LIKPPESATS TAELTTVQSE NQREFSPSHH HQPHSPSTRR
101: SMFSCFNCCV KA
101: SMFSCFNCCV KA
Arabidopsis Description
At5g09960 [Source:UniProtKB/TrEMBL;Acc:Q67XU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.