Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G087230.1 | Barley | cytosol | 48.18 | 77.94 |
| HORVU3Hr1G059370.1 | Barley | cytosol | 47.27 | 76.47 |
| HORVU6Hr1G039070.1 | Barley | cytosol | 43.64 | 70.59 |
| TraesCS4B01G286900.1 | Wheat | nucleus | 60.0 | 55.93 |
| TraesCS4A01G017200.1 | Wheat | nucleus | 57.27 | 54.31 |
| TraesCS4D01G285600.1 | Wheat | nucleus | 57.27 | 52.94 |
| Zm00001d027851_P001 | Maize | cytosol | 50.91 | 52.34 |
| Os03t0169900-01 | Rice | cytosol | 50.0 | 47.41 |
| EER92785 | Sorghum | cytosol, mitochondrion, nucleus | 50.91 | 45.9 |
| Zm00001d048317_P001 | Maize | cytosol | 49.09 | 43.9 |
| HORVU5Hr1G046790.1 | Barley | cytosol | 46.36 | 42.86 |
| HORVU1Hr1G071050.2 | Barley | cytosol | 43.64 | 40.68 |
| HORVU0Hr1G012080.1 | Barley | cytosol | 46.36 | 40.16 |
| GSMUA_Achr6P10580_001 | Banana | nucleus | 35.45 | 38.24 |
| VIT_07s0031g01630.t01 | Wine grape | nucleus | 32.73 | 36.73 |
| Solyc04g051820.2.1 | Tomato | nucleus | 31.82 | 35.71 |
| Solyc04g011910.2.1 | Tomato | nucleus | 30.91 | 35.42 |
| KRH64143 | Soybean | cytosol, endoplasmic reticulum, nucleus | 31.82 | 35.0 |
| KRH43319 | Soybean | nucleus | 30.0 | 34.38 |
| PGSC0003DMT400042668 | Potato | nucleus | 31.82 | 34.31 |
| KRH53801 | Soybean | nucleus | 31.82 | 34.31 |
| Solyc05g051710.2.1 | Tomato | nucleus | 31.82 | 33.98 |
| AT5G09960.1 | Thale cress | nucleus | 34.55 | 33.93 |
| PGSC0003DMT400077395 | Potato | nucleus | 31.82 | 33.02 |
| CDY14517 | Canola | nucleus | 34.55 | 32.76 |
| Bra028607.1-P | Field mustard | nucleus | 33.64 | 32.74 |
| CDX69874 | Canola | nucleus | 32.73 | 32.14 |
| CDY08844 | Canola | nucleus | 33.64 | 31.9 |
| CDY21617 | Canola | nucleus | 32.73 | 31.86 |
| CDX85786 | Canola | nucleus | 32.73 | 31.86 |
| CDY40070 | Canola | nucleus | 32.73 | 31.86 |
| GSMUA_Achr10P... | Banana | nucleus | 36.36 | 31.25 |
| CDX81261 | Canola | nucleus | 32.73 | 31.03 |
| CDY31298 | Canola | nucleus | 32.73 | 31.03 |
| CDY46828 | Canola | nucleus | 32.73 | 30.77 |
| AT5G64850.1 | Thale cress | nucleus | 31.82 | 30.7 |
| Bra024332.1-P | Field mustard | cytosol | 24.55 | 29.67 |
| CDY18692 | Canola | nucleus | 33.64 | 26.24 |
| GSMUA_Achr3P21420_001 | Banana | nucleus | 34.55 | 25.68 |
| KRH59453 | Soybean | cytosol | 30.0 | 25.58 |
| Bra037798.1-P | Field mustard | nucleus | 32.73 | 25.53 |
| Bra031897.1-P | Field mustard | cytosol | 32.73 | 23.53 |
| KRH15631 | Soybean | plastid | 30.91 | 19.65 |
| Bra009071.1-P | Field mustard | nucleus | 33.64 | 15.55 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G071440.2 | EnsemblPlantsGene:HORVU2Hr1G071440 | InterPro:TypeIII_avirulence_cleave | PANTHER:PTHR33882 | PANTHER:PTHR33882:SF1 | PFAM:PF05627 |
| SEG:seg | UniParc:UPI000B488F56 | UniProt:A0A287IDJ7 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr2H:-:509767245..509767689
Molecular Weight (calculated)
12204.7 Da
IEP (calculated)
10.156
GRAVY (calculated)
-0.851
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: LNPPIPMRAC VQGEGATAWM MVPAFGDWDM KNGAMPNYSM DFSKIRKMRK QNKKELSRAS LGGDDDLLAH HKQQQQQPSK PPSPRRWPLM PGTLETRAIE
101: GARDAADSAG
101: GARDAADSAG
1: MDKRRENAAW TPVPQFGGWD QKGPNDATNY SVVFSKARAN RKQNKAGVRH SSLGSEQELM VSVRRNHQQL HHRHETQDDD PVMKKKRILT YINCCIRPN
Arabidopsis Description
RPM1-interacting protein 4 (RIN4) family protein [Source:TAIR;Acc:AT5G19473]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.