Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH53801 | Soybean | nucleus | 70.41 | 67.65 |
| Solyc04g051820.2.1 | Tomato | nucleus | 65.31 | 65.31 |
| KRH43319 | Soybean | nucleus | 61.22 | 62.5 |
| KRH64143 | Soybean | cytosol, endoplasmic reticulum, nucleus | 63.27 | 62.0 |
| CDX69874 | Canola | nucleus | 69.39 | 60.71 |
| Solyc04g011910.2.1 | Tomato | nucleus | 59.18 | 60.42 |
| CDY21617 | Canola | nucleus | 69.39 | 60.18 |
| AT5G09960.1 | Thale cress | nucleus | 66.33 | 58.04 |
| CDY40070 | Canola | nucleus | 66.33 | 57.52 |
| PGSC0003DMT400042668 | Potato | nucleus | 59.18 | 56.86 |
| CDX85786 | Canola | nucleus | 65.31 | 56.64 |
| Bra028607.1-P | Field mustard | nucleus | 64.29 | 55.75 |
| CDX81261 | Canola | nucleus | 65.31 | 55.17 |
| AT5G64850.1 | Thale cress | nucleus | 63.27 | 54.39 |
| Solyc05g051710.2.1 | Tomato | nucleus | 57.14 | 54.37 |
| PGSC0003DMT400077395 | Potato | nucleus | 57.14 | 52.83 |
| CDY31298 | Canola | nucleus | 61.22 | 51.72 |
| CDY14517 | Canola | nucleus | 61.22 | 51.72 |
| CDY08844 | Canola | nucleus | 61.22 | 51.72 |
| HORVU2Hr1G087230.1 | Barley | cytosol | 35.71 | 51.47 |
| CDY46828 | Canola | nucleus | 61.22 | 51.28 |
| HORVU3Hr1G059370.1 | Barley | cytosol | 33.67 | 48.53 |
| GSMUA_Achr6P10580_001 | Banana | nucleus | 47.96 | 46.08 |
| HORVU6Hr1G039070.1 | Barley | cytosol | 31.63 | 45.59 |
| KRH59453 | Soybean | cytosol | 58.16 | 44.19 |
| Os10t0405300-01 | Rice | plasma membrane | 52.04 | 43.22 |
| Zm00001d027851_P001 | Maize | cytosol | 46.94 | 42.99 |
| KXG38577 | Sorghum | cytosol | 50.0 | 42.98 |
| TraesCS4D01G285600.1 | Wheat | nucleus | 52.04 | 42.86 |
| TraesCS4A01G017200.1 | Wheat | nucleus | 50.0 | 42.24 |
| TraesCS4B01G286900.1 | Wheat | nucleus | 50.0 | 41.53 |
| Os03t0169900-01 | Rice | cytosol | 48.98 | 41.38 |
| Zm00001d033003_P001 | Maize | cytosol | 48.98 | 41.38 |
| Bra037798.1-P | Field mustard | nucleus | 57.14 | 39.72 |
| CDY18692 | Canola | nucleus | 56.12 | 39.01 |
| Zm00001d014200_P001 | Maize | nucleus | 45.92 | 37.19 |
| GSMUA_Achr10P... | Banana | nucleus | 47.96 | 36.72 |
| EER92785 | Sorghum | cytosol, mitochondrion, nucleus | 44.9 | 36.07 |
| Zm00001d048317_P001 | Maize | cytosol | 44.9 | 35.77 |
| Bra031897.1-P | Field mustard | cytosol | 55.1 | 35.29 |
| Bra024332.1-P | Field mustard | cytosol | 31.63 | 34.07 |
| HORVU5Hr1G046790.1 | Barley | cytosol | 39.8 | 32.77 |
| HORVU2Hr1G071440.2 | Barley | cytosol | 36.73 | 32.73 |
| KRH15631 | Soybean | plastid | 56.12 | 31.79 |
| HORVU1Hr1G071050.2 | Barley | cytosol | 36.73 | 30.51 |
| Bra009071.1-P | Field mustard | nucleus | 69.39 | 28.57 |
| GSMUA_Achr3P21420_001 | Banana | nucleus | 42.86 | 28.38 |
| HORVU0Hr1G012080.1 | Barley | cytosol | 35.71 | 27.56 |
Protein Annotations
| ArrayExpress:VIT_07s0031g01630 | EMBL:FN595233 | EnsemblPlants:VIT_07s0031g01630.t01 | EnsemblPlantsGene:VIT_07s0031g01630 | EntrezGene:100245593 | EntrezGene:LOC100245593 |
| PANTHER:PTHR33882 | PANTHER:PTHR33882:SF2 | ProteinID:CBI21513 | ProteinID:CBI21513.3 | RefSeq:XP_002279833 | RefSeq:XP_002279833.1 |
| TIGR:TC61646 | unigene:Vvi.7199 | UniParc:UPI00019839F9 | UniProt:D7SW64 | wikigene:100245593 | wikigene:LOC100245593 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7:-:17729968..17733042
Molecular Weight (calculated)
11241.1 Da
IEP (calculated)
8.098
GRAVY (calculated)
-1.092
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MEDRKEKAAP WLSVPQFGDW DQKGQVPDYS LDFSKIREMR KQNKRDVSRA SLGNEEELVA PPTTNADTRQ TDHHHYHQSH SPTGRRSILG CFSCCVKA
001: MEDDRKEKNT PWLSVPQFGD WDQKGGGTMP DYSMDFTKIR EMRKQNKRDP SRASLGNEEE LIKPPESATS TAELTTVQSE NQREFSPSHH HQPHSPSTRR
101: SMFSCFNCCV KA
101: SMFSCFNCCV KA
Arabidopsis Description
At5g09960 [Source:UniProtKB/TrEMBL;Acc:Q67XU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.